Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto4g2356 atgagCATGTTAGGACTAAGAGACCTTGTCCTCATAGCTCCcacaccttcttcttcttcatctcttcaccatcaccaccaccaacactcccaaccaccgccaccaccaccacaaccGCTACAACCCATTTCTtccgaccaccaccaccaccaccaccaccatcatcactccactcttcctcttccttcctcCGCCTCCCTCAGCGTCGGCCTCGGCATTTTCCCTCTTCTCACGGCCACTCCCTGCGTGCCTCCTCACCCTCCTCACCCCAACGATGTCCAAGAGGATTGCGCCAATCCCAATTTCTGGAACCTCAAGATGTGTCCGGAAGTCGCGAATTCCGCCAAGAAAGGGGTAATCGATGCCGCCGCCGCCGCGGCGGAGGCGGATGCGGAtgcggaggaggaggagaacgGGATGATGATGTTTGGGGGCGATTTTAGGGTGTGTCAGGATTGCGGGAATAGGGCTAAGAAAGATTGTGGGTTTAGGAGATGCAGGACTTGTTGCAAGGGGCGTGGCTACGATTGCAGCACTCACTTGAAGAGCACGTGGGTCCCGGCGGCTCGGCGCCGCGAACGGCATATGGCGGCCGCGGCGGCGGTGGTTTCCGCCGGGGGCGATGGTTCTGGATCGGCGGCTCCCGGTGGTGGTGCTAAGAGACCTAGAGCTCTGGGGTCATCGCAGAATGCTACTACTACTTCTCATAGTTCTGCGTCCAACGCTACCACACCAAGGAGCTTCGATACTAGCTCTTATCACCAAGATGCTAGTTTCAAGCAGTCACTACCAGGCCATGTTCGTGCTCCTGCGGTCTTCAGGTGCCATAGAGTGTCAGCTATTGGTAATGGAGAAGATGAGTTTGCCTACATGGCCACAGTCCATATTAGGGGCCATGTCTTCAGGGGTTTTCTGTATGATCAAGGATCTGATGAGAAAAATACGGTCACTTGTGTTTCAGAACTTCAGTTGGGAAACTATAACAGTGGAAAGAATAAGGAATGTTCTTCTCCAATGGGGGTTCCAACTAATGCTTACCCTGCTTCTGGGTGCTGA 1056 0.4612 MSMLGLRDLVLIAPTPSSSSSLHHHHHQHSQPPPPPPQPLQPISSDHHHHHHHHHHSTLPLPSSASLSVGLGIFPLLTATPCVPPHPPHPNDVQEDCANPNFWNLKMCPEVANSAKKGVIDAAAAAAEADADAEEEENGMMMFGGDFRVCQDCGNRAKKDCGFRRCRTCCKGRGYDCSTHLKSTWVPAARRRERHMAAAAAVVSAGGDGSGSAAPGGGAKRPRALGSSQNATTTSHSSASNATTPRSFDTSSYHQDASFKQSLPGHVRAPAVFRCHRVSAIGNGEDEFAYMATVHIRGHVFRGFLYDQGSDEKNTVTCVSELQLGNYNSGKNKECSSPMGVPTNAYPASGC 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto4g2356 351 MobiDBLite consensus disorder prediction 200 255 - -
Sto4g2356 351 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 263 309 IPR006511 -
Sto4g2356 351 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 149 191 IPR006510 -
Sto4g2356 351 Pfam Domain of unknown function (DUF702) 149 311 - -
Sto4g2356 351 PANTHER LRP1 CARBOXY-TERMINAL DOMAIN PROTEIN 2 351 - -
Sto4g2356 351 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 2 351 IPR007818 GO:0003700|GO:0006355
Sto4g2356 351 MobiDBLite consensus disorder prediction 15 63 - -
Sto4g2356 351 MobiDBLite consensus disorder prediction 225 255 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto4g2356 Sto-Chr4 24936278 24937814 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto4g2356 1 345 C2H2 Transcription Factor Family AT5G12330 38.395 3.03e-56 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Sto4g2356 DUF702 1e-56 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto4g2356 - - gmx:100806835 344.739