Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto4g2334 ATGAGTCCACCTGCTGAGGAGAAGATGGAAGATAATAAGCCTTCAGCTGCCTCAGCCAACAGTTCACAGGTTGATGGCGAACATGGTGACCCCGCTGAAAGTCGTTTCACTGAATTCTGCAAGAATGGGCTATCATTGGATGAGGAAAGTTGTAGACAAGCAATGAAGCTGTTCACGGAAACCAAACATCTTTTACTGACAAATATTTCATCTTTAGGGAATGGAACGTATGAAGAAGCAGAACGGTATTGGTTTTCGTTTATTTTATACTCTGTCAAGAGATTGGCTGAGAAGCATGCGGACAGTGAAAAGGAAGAGACTGATGGCAATGGGCTTACCTTGTGCCAGATATTGAGAAAGGCAAAGCTAAACATCATGGATTTCTTCAAAGAACTTCCTCAGTTTGTTGTTAAGGGTGGTCCAGTTTTAAGCAATATATATGGCACAGATTGGGAAAACAGGCTTGAGGCAAAGGAGTTGCAAGCCAATTTTCTTCACTTAAGCATTCTTAGCAAGTATTATAAACGCGCATTTGGGGAGTTCTTCTTGGCAAATAATGCAAATGAAAAGCAATCAGATGCTTCCATGACCACTGATTATGCATCTCAATATCATCGTTTTGGATGGTTGCTTTTCTTGGCTCTTCGCGTACATGCTTTCAGCCGTTTCAAAGACTTAGTGACCTGCACCAATGGTTTAGTTTCCATATTGGCCATCTTGATTATTCACATTCCTGCTCGCTTTAGAAGTTTTAACATTCACGACTCTTCACGCTTTGTTAAGAAAAGTAGCAAACGTGTGGACATTGTTGCATCACTTTGCAACATCTATGATACTTCGGAAGATGAGGTTAGGAAAACCATGGAGAAAGCCAATAATTTAATTGCAGATATATTGAAAAAGAAGCCTTGTCTGGCATCTGAATGTGAAACTGAAACACTGGAAAGTATAGACAAAGATGGTTTGGTCTACTTTAATGATCTTATGGAGGAATCATCTTTGTCATCCTGTATAAATATCTTGGAAAAAGATTATAATTATGCAATTCGTAACAAGGGTGAACTGGATGAGAGGTTGTTCCTTAATGAAGAGGATAGCTTATTAGCATCAGGAAGCTTGTCTGGAGGTTCAATGTCAGCAAGTGGTGTCAAGAGGAAATTCGATTTATTGGCATCACCTGCAAAGACAATTACAAGTCCACTCTCTCCCCAACGCTCTCCGACATCTCATGCAAACGGTGTTCCAGGGAGTGCAAATTCAAAGATGGCTGCCACCCCTGTGACCACCGCTATGACTACTGCTAAGTGGCTTCGTACTGTCATATCTCCACTTCCATCAAAGCCCTCACCAGAGCTGGAAAGATTTCTGGCATCATGTGATAGGGATGTTACCAGTGACGTAGTGCGCAGGGCACAGATTATATTGCAGGCTATATTTCCTAGCAGTCCTCTAGGAGAACGGTGTTTAACTGGAAGCCTTCAGGGTGCAAATCTCATGGACAATGTTTGGGCGGAACAACGAAGACTGGAAGCCCTTAAGTTATATTATAGGGTCTTGGAGGCAATGTGTAGAGCAGAAGCCCAAATACTGCATGCAACAAATTTGACCTCATTATTAACTAATGAGAGGTTCCATAGATGTATGCTTGCTTGTTCTGCGGAATTAGTGCTGGCAACGCACAAGACTGTAACAATGTTGTTTCCTGCAGTGTTGGAGAGGACTGGAATTACGGCTTTTGATCTTAGTAAGGTGATAGAAAGTTTCATAAGACATGAGGATTCTCTCCCAAGAGAATTGAGGCGACATCTGAATTCCCTGGAAGAAAGACTATTGGAGAGTATGGTATGGGAAAAGGGTTCCTCAATGTATAATTCTTTGACAGTTGCTAGACCTTCCCTCTCTTCAGACATAAATCGTCTTGGATTGTTAGCTGAACCAATGCCATCATTAGACGAAATTGCAATGCATATTAACTTCTCCTGCGGGGGTTTGCCCCCTGTGCCTTCCTTGCAGAAGCTTGATACTTTACCAAGTCAGAATGGGGATACCAGGTCTCCAAAGCGTCTCTGCACAGAATATCGAAGTGTACTAGGAGAACGAAATTCCTTTACATCACCAGTGAAGGATCGGCTTTTGCCATTCAGCAACCTTAAGTCAAAGCTTCCACCTCCGTTGCAGTCAGCTTTTGCCAGTCCAACTAGACCGAATCCAGGAGGTGGAGGGGAAACATGTGCAGAAACTGGGATCAATATCTTTTTTGGAAAGATTGTTAAGTTGGCGGCAGTTAGAATAAGTGGTATGGTTGAAAGGCTACAATTATCTCAGCAGATAAGAGAGAATGTATACTGTCTTTTCCAACAAGTTCTAAATCAACGGACGTCACTCTTCTTCAACCGCCATATGGACCAGATCATTCTCTGTTGTTTCTATGGAATTGCAAAgATTTCTTCACTGAACCTAACTTTTAGGGAAATCATTTACAACTATAGGAAGCAACCACAATGCAAGCCACAAGTTTTTCGCAATGTATTTATTGATTATTCGTCGATACGCCGTAGTGGGAAAACAGGACCGGATCATGTTGACATCATTTCATTTTACAATGAAGTATTCATTCCCTCTGCAAAAGCTCTGCTGGTTGAATTTGGTCCTGGAGGAACGACAAAAATCAACCGGATGCCTGAAGCCAACATTAACAATGATGGCAATTTAGCTCAATGTCCAGGATCTCCTAAAATTTCTCCTTTCCCTAGCCTTCCTGACATGTCCCCAAAGAAAGTGTCTGCTACACACAATGTATATGTCTCTCCGTTACGATCATCCAAGATGGATGCTCTAATATCACATACCAACAAAAGCTACTATGCCTGTGTTGGGGAGAGCACTCGAGCATATCAGAGCCCTTCGAAAGACCTGACGGCTATCAATAACCGTTTGAATGGCACCCGGAAGGTTAGAGGTTCCCTGAACTTTGATGATGTTGACGTTGGATTGGTGAGTGACTCCATGGTTGCAAATAGCCTCTATCTTCAGAATGGCAGTTGTGCATCCTCATCAGGTGCACCATTGAAGTCAGAGCAGCCAGACTCTTGA 3093 0.4239 MSPPAEEKMEDNKPSAASANSSQVDGEHGDPAESRFTEFCKNGLSLDEESCRQAMKLFTETKHLLLTNISSLGNGTYEEAERYWFSFILYSVKRLAEKHADSEKEETDGNGLTLCQILRKAKLNIMDFFKELPQFVVKGGPVLSNIYGTDWENRLEAKELQANFLHLSILSKYYKRAFGEFFLANNANEKQSDASMTTDYASQYHRFGWLLFLALRVHAFSRFKDLVTCTNGLVSILAILIIHIPARFRSFNIHDSSRFVKKSSKRVDIVASLCNIYDTSEDEVRKTMEKANNLIADILKKKPCLASECETETLESIDKDGLVYFNDLMEESSLSSCINILEKDYNYAIRNKGELDERLFLNEEDSLLASGSLSGGSMSASGVKRKFDLLASPAKTITSPLSPQRSPTSHANGVPGSANSKMAATPVTTAMTTAKWLRTVISPLPSKPSPELERFLASCDRDVTSDVVRRAQIILQAIFPSSPLGERCLTGSLQGANLMDNVWAEQRRLEALKLYYRVLEAMCRAEAQILHATNLTSLLTNERFHRCMLACSAELVLATHKTVTMLFPAVLERTGITAFDLSKVIESFIRHEDSLPRELRRHLNSLEERLLESMVWEKGSSMYNSLTVARPSLSSDINRLGLLAEPMPSLDEIAMHINFSCGGLPPVPSLQKLDTLPSQNGDTRSPKRLCTEYRSVLGERNSFTSPVKDRLLPFSNLKSKLPPPLQSAFASPTRPNPGGGGETCAETGINIFFGKIVKLAAVRISGMVERLQLSQQIRENVYCLFQQVLNQRTSLFFNRHMDQIILCCFYGIAKISSLNLTFREIIYNYRKQPQCKPQVFRNVFIDYSSIRRSGKTGPDHVDIISFYNEVFIPSAKALLVEFGPGGTTKINRMPEANINNDGNLAQCPGSPKISPFPSLPDMSPKKVSATHNVYVSPLRSSKMDALISHTNKSYYACVGESTRAYQSPSKDLTAINNRLNGTRKVRGSLNFDDVDVGLVSDSMVANSLYLQNGSCASSSGAPLKSEQPDS 1030
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto4g2334 1030 Pfam Domain of unknown function (DUF3452) 105 243 IPR024599 -
Sto4g2334 1030 PANTHER BNACNNG22930D PROTEIN 28 1017 - -
Sto4g2334 1030 SMART RB_A_2 425 626 IPR002720 GO:0005634|GO:0051726
Sto4g2334 1030 Gene3D - 204 362 - -
Sto4g2334 1030 SUPERFAMILY Cyclin-like 747 894 IPR036915 -
Sto4g2334 1030 MobiDBLite consensus disorder prediction 396 421 - -
Sto4g2334 1030 Pfam Retinoblastoma-associated protein B domain 749 876 IPR002719 GO:0005634|GO:0051726
Sto4g2334 1030 Pfam Retinoblastoma-associated protein A domain 425 626 IPR002720 GO:0005634|GO:0051726
Sto4g2334 1030 SMART DUF3452_2 95 243 IPR024599 -
Sto4g2334 1030 Gene3D - 428 616 - -
Sto4g2334 1030 MobiDBLite consensus disorder prediction 1 32 - -
Sto4g2334 1030 PANTHER RETINOBLASTOMA-ASSOCIATED PROTEIN RB -RELATED 28 1017 IPR028309 GO:0006357|GO:0051726
Sto4g2334 1030 SUPERFAMILY Cyclin-like 433 628 IPR036915 -
Sto4g2334 1030 Gene3D - 713 900 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto4g2334 Sto-Chr4 24736118 24742594 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto4g2334 28 1030 Core Cell Cycle Gene Families AT3G12280 71.076 0.0 1427
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR RB Sto4g2334 RB_A 1.4e-64 CL0065
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto4g2334 K04681 - gmx:100777805 1669.06