Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto4g2326 ATGGAAAGTGAAAGATGTGGGTACCCAGGAAATGGGTTTGAGGTATATTGCAACCATAAGGATAATAAGAACCAAACATTGATTTATCTTCCAAATGCTGGGGAATTCCTAGTCAACACTATTGGGTATTACAATCGTAAGGTTTGGATCAATGATCCTGACGATTGTCTCCCTAGACGATATCTCAACCAGGGAACCATTAACTTTTCAGGTTCTCCCTTCCAATTGGGTGACAATATGAAACTTGTGAATTTTACCTTCCTCAACTGTTCCAACAAAGATTTTCATGGTTATTATCCATTGGAGCCCATATCTTGCCTCGGCAATGGCAATGACGACACGGCCGTGGTGGCTATGGTGTCAGAAGCCGTACCATCCTATCCGTCGCCGCCGCCGGAGGTTAACTTGTCGGGCTGCCGGGTGATTTCCAATGCTTCCATTCCCTTTGATGAATATGGGTATGGGTTATACTGGATGGGGCAGCTCTTCATTGATATCGAATTGCAATGGACAAACCCTAGCTGCAGTTATCAAAATTATTATAATGGAGAATCAAATCAAAGAAAATTTGCCCTAGGCTTAGGCCTAGGACTACCCGGAGGAATGATATGTCTCATAgtgatttcttattttctttacaATGCTAACATGAGGAGGAGGATGAATCCAGAAGATCAAGCACAAGATCGTCACCATCATGATGATCAAGAAGCAGAAGGCATAGAAtttataaataacaataataactcAAGAATGGTAAACAGTAATAATGCAGCAGTAGTATTAGTAGTGGACACAGCAAGGTATCCCAAGTCAAAGGTTGAAGATGATGGAGGGTTACCAAACCCTAATGACAATGTGTGCTCCATATGTCTGTGTGAGTATCAGCCAAAGGAGACATTGAGAACCATCACAGATTGCAACCATTATTTCCATTCACCTTGCTTGGAAGATTGGCTTAAGATTAATGCTTCTTGCCCTTTGTGTAGGAATTTGCCTAAGAATGCTTCCTCCTCTTCTAATTATTCTATGTCccattcttcatcatcttcttcttcctga 1062 0.3945 MESERCGYPGNGFEVYCNHKDNKNQTLIYLPNAGEFLVNTIGYYNRKVWINDPDDCLPRRYLNQGTINFSGSPFQLGDNMKLVNFTFLNCSNKDFHGYYPLEPISCLGNGNDDTAVVAMVSEAVPSYPSPPPEVNLSGCRVISNASIPFDEYGYGLYWMGQLFIDIELQWTNPSCSYQNYYNGESNQRKFALGLGLGLPGGMICLIVISYFLYNANMRRRMNPEDQAQDRHHHDDQEAEGIEFINNNNNSRMVNSNNAAVVLVVDTARYPKSKVEDDGGLPNPNDNVCSICLCEYQPKETLRTITDCNHYFHSPCLEDWLKINASCPLCRNLPKNASSSSNYSMSHSSSSSSS 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto4g2326 353 CDD RING-H2_PA-TM-RING 287 330 - -
Sto4g2326 353 SMART ring_2 288 329 IPR001841 -
Sto4g2326 353 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 2 180 - -
Sto4g2326 353 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 183 352 - -
Sto4g2326 353 Pfam Ring finger domain 287 330 IPR001841 -
Sto4g2326 353 PANTHER RING-H2 FINGER PROTEIN ATL20-LIKE 2 180 - -
Sto4g2326 353 PANTHER RING-H2 FINGER PROTEIN ATL20-LIKE 183 352 - -
Sto4g2326 353 SUPERFAMILY RING/U-box 287 332 - -
Sto4g2326 353 ProSiteProfiles Zinc finger RING-type profile. 288 330 IPR001841 -
Sto4g2326 353 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 243 335 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto4g2326 Sto-Chr4 24668395 24672261 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto4g2326 2 333 C3H Transcription Factor Family AT2G25410 31.034 7.26e-34 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto4g2326 - - lja:Lj4g3v3004070.1 220.705