Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto4g2284 ATGGCTTTGAATTCTAAGGATCATCAAGAAGATGATTCTTTTCTCATTTCAGCCATGAATATGTGCCATGGCCATATTTTATCTTCTGCTTTAAATGCTGCTATTGAGCTCAACTTATTCGAGATTATAGCTAAGGCAGATGGGAGACATGTGTCAGTCACTGAAATTGCTTCTCAACTTCCAAATTCAACTTCACATGAGATTATAGCTTTCAAGCTGGATCGTCTCTTAAGGCTTCTTGCTAGTCACTCTCTTCTTACTTGTTCATATGTCGCCAATCAAAGTGACGACcctgaaggagagagagaaagactcTATGCCATTTCCCCCATTGGAAAATTCTTTGTTAGTGGTCACAACAACAATGGTGGATATTTGGGTTTGTCCTCATTAATGGTGGCTCATCCAACACTTGTGGATGTTTGGTTCAATTTTAAGAATGCAATAATAGATGAGGACCCCAACCTCTTCAAGAAAGTTCATGGAATGCCCATCTACCGATACTCAAAGATAGACCCAATATGGAATAACTTGTTCAACAAAGCAATGGAAAATCTTAGCTTTATATGGATGAAAAGGATACTTGAAATATACAAAGGATTTGAGGGAATTTCAACACTTGTGGATGTGGGAGGTGGTAATGCTCAAACCCTAAAAATGATACTCTCTAAGTATCCTTCAATTAAggttattaattttgatttgccCCATGTCATTCAAAATGCACCACCCCATCCAGggATAGAGCATGTTGGAGGAGATATGTTTGCAAGTGTTCCCAAAGGTGATGCCATAATTTTGAAGAGTGTCTGCCACAATTGGTCAGATGAAAGTAGCATAAAAATTCTGAGAAAATGCTACGAGTCATTGCCAGAAAATGGGAAGGTGATTATTTTGGAGTTGGTAATGCCAGAAGAAGTTGAGCAATCAGAAGAATGCCAGCTTGTTTCAAACATTGACAACTACATGTTTATGGTTGAGGGAAGAGTAAGAACCATGAATATGTGTCATGGCCATATTTTATCTGCTGCTTTAAATGCTGCTATTGAGCTCAACTTATTCGAGATTATAGCTAAGGCAGATGGGAGACACGTGTCAGTCACTGAAATTGCTTCTCAACTTCCAAATTCATCAACTTCACATGAGATTATAGTTTTCAGGCTGGATCGTCTCTTAAGGCTTCTTGCTAGTCACTCTCTTCTTACTTGTTCCTATGTCGCCAATCAAAGTGACGAcaatgaaagagagagagaaagactcTATGCCATTTCCCCCATTGGAAAATTCTTTGTTAGTGGTCACCACAACAATGGTGGATATTTGGGTTTGTCCTCATTAATGGTGGCTCATCCATCATTTGTGGATGTTTGGTTCAATTTTAAGAATGCAATAATAGACGAAGACCCCAACCTCTTCAAGAAAGTTCATGGAATGCCATTGTACCAATATGCAAAGATAGACCCAATATGGAATAACTTGTTCAACAAAGCAATGGAAAATCTTAGCTTTATAGTGATGAGAAGGATACTTAAAATATACAAAGGATTTGAGGGAATTTCAACACTTGTGGATGTGGGAGGTGGTAATGCTCAAACCCTAAAAATGATACTCTCCAAGTATCCTTCAATTAAGgctattaattttgatttgccCCATGTCATTCAAAATGCACCACCCCATCCAGggATAGAGCATGTTGGAGGAGATATGTTTGCCAGTGTTCCCAAAGGTGATGCCATAATTTTGAAGAGTATCTGCCACAATTGGTCAGATGAAAGCAGCATAAAAATTCTGAGAAAATGCTACGATTCATTGCCAGAAAATGGGAAGGTGATTATTTTTGAGTTCATAATGCCAGAAGAAGTTGAGCAATCAGAAGAAGCCAAGCTTGTTTCAGAGATTGACAACTACATGTTTATTGTTGAGGGAAGAGTAAGAAGTGAGAGAGAGTTCAAGTCTTTGTGCAAACGTTCTGGATTTTCTGCCTTCAAATTTGCTTGCCGTGCCTTCAATGTTCAAGGACTCATAGAATTTTACAAATAA 2043 0.3666 MALNSKDHQEDDSFLISAMNMCHGHILSSALNAAIELNLFEIIAKADGRHVSVTEIASQLPNSTSHEIIAFKLDRLLRLLASHSLLTCSYVANQSDDPEGERERLYAISPIGKFFVSGHNNNGGYLGLSSLMVAHPTLVDVWFNFKNAIIDEDPNLFKKVHGMPIYRYSKIDPIWNNLFNKAMENLSFIWMKRILEIYKGFEGISTLVDVGGGNAQTLKMILSKYPSIKVINFDLPHVIQNAPPHPGIEHVGGDMFASVPKGDAIILKSVCHNWSDESSIKILRKCYESLPENGKVIILELVMPEEVEQSEECQLVSNIDNYMFMVEGRVRTMNMCHGHILSAALNAAIELNLFEIIAKADGRHVSVTEIASQLPNSSTSHEIIVFRLDRLLRLLASHSLLTCSYVANQSDDNERERERLYAISPIGKFFVSGHHNNGGYLGLSSLMVAHPSFVDVWFNFKNAIIDEDPNLFKKVHGMPLYQYAKIDPIWNNLFNKAMENLSFIVMRRILKIYKGFEGISTLVDVGGGNAQTLKMILSKYPSIKAINFDLPHVIQNAPPHPGIEHVGGDMFASVPKGDAIILKSICHNWSDESSIKILRKCYDSLPENGKVIIFEFIMPEEVEQSEEAKLVSEIDNYMFIVEGRVRSEREFKSLCKRSGFSAFKFACRAFNVQGLIEFYK 680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto4g2284 680 PANTHER CAFFEIC ACID O-METHYLTRANSFERASE 335 680 - -
Sto4g2284 680 PANTHER CAFFEIC ACID O-METHYLTRANSFERASE 16 333 - -
Sto4g2284 680 Pfam Dimerisation domain 30 81 IPR012967 GO:0046983
Sto4g2284 680 Pfam Dimerisation domain 344 396 IPR012967 GO:0046983
Sto4g2284 680 PANTHER O-METHYLTRANSFERASE 16 333 IPR016461 GO:0008168
Sto4g2284 680 PANTHER O-METHYLTRANSFERASE 335 680 IPR016461 GO:0008168
Sto4g2284 680 Pfam O-methyltransferase domain 142 334 IPR001077 GO:0008171
Sto4g2284 680 Pfam O-methyltransferase domain 457 661 IPR001077 GO:0008171
Sto4g2284 680 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 19 334 IPR016461 GO:0008168
Sto4g2284 680 CDD AdoMet_MTases 206 298 - -
Sto4g2284 680 CDD AdoMet_MTases 521 613 - -
Sto4g2284 680 SUPERFAMILY "Winged helix" DNA-binding domain 327 434 IPR036390 -
Sto4g2284 680 Gene3D Vaccinia Virus protein VP39 491 669 IPR029063 -
Sto4g2284 680 Gene3D Vaccinia Virus protein VP39 176 333 IPR029063 -
Sto4g2284 680 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 333 680 IPR016461 GO:0008168
Sto4g2284 680 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 125 338 IPR029063 -
Sto4g2284 680 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 440 678 IPR029063 -
Sto4g2284 680 Gene3D - 26 194 IPR036388 -
Sto4g2284 680 Gene3D - 340 509 IPR036388 -
Sto4g2284 680 SUPERFAMILY "Winged helix" DNA-binding domain 11 119 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto4g2284 Sto-Chr4 24257941 24272318 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto4g2284 327 680 Monolignol Biosynthesis Gene Families AT5G54160 47.191 3.99e-103 317
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto4g2284 - - gmx:100798347 362.459