Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto4g2183 ATGTCCGATATTATGGCACTCTTATCTTttagagttgttgaaaaatCTACGTTTCCTGAAGTCTTTCATAACGTGCCCTTACAACACCACAATTTCATAGACGACATAGAGAATTTCAATGTCAAATTCTGTGTCCAATTTGAATTTCATCGTCTCTCCGGTGACATTCAGCCACTCTCCATTCCCTCGACTCCGATCTCCTCCCATTATGTTTCTTGTGCACATTTTTTCCGAGACGGTACATCTTTCTTGCGAAGCAACCTATACCATCCACTATTTACCGATGAAGCTCTCGACGATTTGATACCTATGATTATGTCCGATGCGGAACTATTATTTGGCTTTCAAACTTGTGGTCGCTCTTATGTTGGGGAATGTCCTGTTGTGTACTCTATGGCTGTGGAAGTTTTCGTTGAAATACCGGAGACCGAAGAGATTGCGAGGGAAATTAGGCTTGCGTGGGAGTTtgagcaacaaatacaaatgaTTCCTGCTTCCGAGGAAGCCATACGGTTGCTTAAGGTTCAAGAATATGTTCATAATTGCGAGAATCAGTGTTGCTGCTGCATTTGTCTCGAAGATTTACGCGACAGCAAACAGGTTGCGACAATGCCGTGTCGTCATGTTTTCCACAATGATTGCATTGTGGAGTGGCTAAAAAAAAGTCATGTGTGTCCGCTGTGTCGTTACTCGATGTCTACTGACTTAGATATTTAG 717 0.4086 MSDIMALLSFRVVEKSTFPEVFHNVPLQHHNFIDDIENFNVKFCVQFEFHRLSGDIQPLSIPSTPISSHYVSCAHFFRDGTSFLRSNLYHPLFTDEALDDLIPMIMSDAELLFGFQTCGRSYVGECPVVYSMAVEVFVEIPETEEIAREIRLAWEFEQQIQMIPASEEAIRLLKVQEYVHNCENQCCCCICLEDLRDSKQVATMPCRHVFHNDCIVEWLKKSHVCPLCRYSMSTDLDI 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto4g2183 238 ProSiteProfiles Zinc finger RING-type profile. 188 229 IPR001841 -
Sto4g2183 238 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 153 235 IPR013083 -
Sto4g2183 238 SUPERFAMILY RING/U-box 175 235 - -
Sto4g2183 238 Pfam Ring finger domain 188 229 IPR001841 -
Sto4g2183 238 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 148 232 - -
Sto4g2183 238 SMART ring_2 188 228 IPR001841 -
Sto4g2183 238 PANTHER F6A14.12 PROTEIN-RELATED 148 232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto4g2183 Sto-Chr4 23277957 23278673 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto4g2183 155 235 C3H Transcription Factor Family AT5G60820 37.209 6.80e-15 71.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto4g2183 - - aprc:113870408 100.523