Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto4g2176 ATGGAGGTGCATTTCATAGATACGGGATTTCCTTATACTGTTACTGAAAGCTTCATGGACTTCTTTGAAGGCCTCACGCATGTGCCAATGAATTATGCCCATGCCGGACCCATGACTGATCAGGAAAGTGTCTACTGGTCGATGAATATGCACCCGTATAAATTTGGAACGTCTGGTCATTTGGGTACATCTTATTTTGGTTATCCTGAGATGAATTATCCCTTGCCCTTGCCTAGAATGGAGGTCAACAGGGTAGAGTGGGAAAACCCTTCAACGATCACCATTGAGGAGCCTGCTACAACAGTCTCTTTGTCCAGAAGAGATGAAATCAATGGCATGCAGACTATTCCTGAAGAATGCAGTCCAAATCATCAAGATTCAAGTAGTACCCAGGTTGTATGGCAGCATGACAACATTGATCCTGATAATATGACTTATGAGGAGTTACTGGACTTGGGTGAGGCAGTTGGAACTCAAAGCAGGGGCCTTTCCAAAGAACAAATTGATTTGCTTCCAACCTCGAAGTACAATTTCAAAAGCttgtttaaaagaaaaaaatctggGAAGAGGTGTGTGATTTGTCAGATGACATACAAAAGAGGTGATCAGCAAATGAAATTGCCATGCACGCATGTTTACCATGGTGAATGCATCACAAAATGGCTTAGCATTAATAAGAAATGCCCAGTTTGCAACTCTGAGGTATTTGGCGATGATTCAAGTAATTAG 729 0.4115 MEVHFIDTGFPYTVTESFMDFFEGLTHVPMNYAHAGPMTDQESVYWSMNMHPYKFGTSGHLGTSYFGYPEMNYPLPLPRMEVNRVEWENPSTITIEEPATTVSLSRRDEINGMQTIPEECSPNHQDSSSTQVVWQHDNIDPDNMTYEELLDLGEAVGTQSRGLSKEQIDLLPTSKYNFKSLFKRKKSGKRCVICQMTYKRGDQQMKLPCTHVYHGECITKWLSINKKCPVCNSEVFGDDSSN 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto4g2176 242 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 153 236 IPR013083 -
Sto4g2176 242 SMART ring_2 191 231 IPR001841 -
Sto4g2176 242 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BIG BROTHER 1 241 - -
Sto4g2176 242 SUPERFAMILY RING/U-box 190 236 - -
Sto4g2176 242 Pfam Ring finger domain 190 232 IPR001841 -
Sto4g2176 242 ProSiteProfiles Zinc finger RING-type profile. 191 232 IPR001841 -
Sto4g2176 242 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 241 IPR033276 GO:0004842|GO:0016567|GO:0046621
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto4g2176 Sto-Chr4 23168000 23172820 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto4g2176 2 240 C3H Transcription Factor Family AT3G63530 53.333 3.46e-90 265
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto4g2176 K19045 - gmx:100792734 373.629
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto4g2176 4 23168000 23172820 Sto4g2176 4 23168000 23172820 ECH