Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto4g2173 ATGGGGGAAAAAGAAGAACTTGGTGTGGTTTCTGGATACCCTTTGGAAAGATTAAACAAGGGTCAGTATTGGATTCCCACACCTTCTCAGATTCTCATTGGCCCTACTCAGTTCTCTTGCCCCGTCTGCTCCAAGACTTTCAATAGATACAACAATCTCCAGATGCACATGTGGGGGCATGGGTCTCAATACAGGAAAGGGCCAGACTCCCTGAGAGGGACACAGCCCACAGCAATGCTGAGGCTGCCATGCTTCTGCTGTGCACAAGGGTGCAAGCACAACATAGAGCACCCAAGGGCAAGGCCCTTGAAGGACTTTAGGACCCTCCAAACCCACTACAAGAGGAAGCATGGCATCAAGCCCTATTGCTGCACCAAGTGTGGGAAGCCCTTTGCTGTGAAGGGAGATTGGAGGACTCATGAGAAGAACTGTGGCAAGATATGGTTCTGCCTCTGTGGATCTGATTTCAAACACAAGAGGTCACTCAAGGATCACATTAAGGCATTTGGTCACTCCCATGCACCTTTTCTAcctaatcatcatcatcatcatcaggaaGAAGATGTTGAAGCAGCTTCTGATGTTGAACAAGATGGggataattaa 606 0.4604 MGEKEELGVVSGYPLERLNKGQYWIPTPSQILIGPTQFSCPVCSKTFNRYNNLQMHMWGHGSQYRKGPDSLRGTQPTAMLRLPCFCCAQGCKHNIEHPRARPLKDFRTLQTHYKRKHGIKPYCCTKCGKPFAVKGDWRTHEKNCGKIWFCLCGSDFKHKRSLKDHIKAFGHSHAPFLPNHHHHHQEEDVEAASDVEQDGDN 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto4g2173 201 Pfam Zinc finger, C2H2 type 38 57 IPR013087 -
Sto4g2173 201 PANTHER ZINC FINGER PROTEIN WIP2 14 197 - -
Sto4g2173 201 SMART c2h2final6 148 171 IPR013087 -
Sto4g2173 201 SMART c2h2final6 122 142 IPR013087 -
Sto4g2173 201 SMART c2h2final6 38 60 IPR013087 -
Sto4g2173 201 MobiDBLite consensus disorder prediction 177 201 - -
Sto4g2173 201 PANTHER ZINC FINGER PROTEIN WIP2 14 197 IPR043584 GO:0003700|GO:0010468
Sto4g2173 201 SUPERFAMILY beta-beta-alpha zinc fingers 32 60 IPR036236 -
Sto4g2173 201 Gene3D Classic Zinc Finger 37 60 - -
Sto4g2173 201 ProSiteProfiles Zinc finger C2H2 type domain profile. 38 65 IPR013087 -
Sto4g2173 201 ProSitePatterns Zinc finger C2H2 type domain signature. 40 60 IPR013087 -
Sto4g2173 201 Gene3D Classic Zinc Finger 100 175 - -
Sto4g2173 201 SUPERFAMILY beta-beta-alpha zinc fingers 107 142 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto4g2173 Sto-Chr4 23116799 23119676 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto4g2173 3 197 C2H2 Transcription Factor Family AT3G57670 74.872 3.53e-109 316
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Sto4g2173 zf-C2H2 0.00029 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto4g2173 - - gmx:100794446 358.607
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto4g2173 4 23116799 23119676 Sto4g2173 4 23116799 23119676 ECH