Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto4g2170 CTGAAGAGTACGAAAATAACCGCTCACAAGGGTGTTTCCGTAAATTCCGGAAGAGGCGGTAGGAAAGAACGGTGCTACTGCTATACGCAACTCCAAGCCGGGTTTTCCAATGCGTTGTGCTTGGATGCAAATTCCATTGATCGCCCTATGTCTAAGAGGTATTGCAAGTTCTTTGCTCGTGGAGCATGTGTCAAAGGGGAGCAATGTGAATATTCTCATGACAGAAAGGATTCTTTGATTTGCAAATTCTATCAGAAAGGGTTCTGTGCTTATGGTAGTCGATGCAGATATAAACATGTCAAAGCTTCTCAAGCACAATCTTCAGAAAATGGACACCAATTCCTGGCTTCTGATTCTATGGTAGCTCGAATTACTAGTCCTAGAGGAACATCGAATTGGGTTCCTAAGGCTGCAGAGTTGTCTGTCACTGACAAACATGCAAAGATTCTAAAACGTAAGCATCGGGATATGCAAAAGAATGGTGATGCCGGCGAATCCAGTACGGCTTTACCACCAGAGCATTTCTTTTGTACGTTTTCTGCTTCCAACTGCCCCTTTGGAGAAAAGTGTTCTTATATTCATGGAGACAAATGTGTATATTGTAAAAAGTTCTGCTTGCATCCTACTGAcccaaaggaaagaaagaagcatCAGAGGAGTTGTGAGAAAAAGGGAAAATATCTTCAGACTTTGAATGACAGTCAAGAAATTGAATGCAACATTTGCCTGGAGCATGTTCTTTCTAAGCCTAAAGCATCTGATCGTAAGTTTGGGGTGCTTCCTGAATGCGATCATGCTTTCTGTATATCCTGTATCAGGAATTGGCGTAATAGTGCCCCGTCCTCGGCAATGGGTTCCAATAATGCTGTGAGAACCTGCCCAGTGTGCCGCAAGCTATCGTATTATGTCATACCAAGTAATATTTGGTATTCTactaaggaggagaaggaggaaATTATTGACAACTACAAGACAAACTGCAAGTTGATTGATTGCAAGCATTTTGACTTTGGCAATGGGAACTGTCCATTTGGGAATAATTGTTTCTACAAGCATACTGTGAAGCCTGGCTCGTACACATGGATACATCACAGGCCACCCCCACCTCCTCGCAATCCACGTAATATGAATGTACTCAACCAATTTGGTTTTGAAAGTGAAGAATTTGATTCAATCATTCCAGATTTTGAGTTTTTCAATGATATGGATCCATTCGAGACGATGCCGGATGGTTCAGGGCTGTTTGATTTTGAAGATTCTGATGGAGAAATGGATTCTTTTAACTTGGCTGCTAGACCAGAGTTCCTGAACTTTGGTTCAGACACCATTAGTTCCGAAGAATCCGATCCATTCGACTTTATGCTTTTAGCAGAGGGACTGGATGGTTCAGGGTGGTCTGTTCCTGAAGAttctgaagatgatgatggtggtggaaTGGGTATCATGCCACCATCAGAGATGCTATGTGGTTGTTCAGGTTCATCTTACCCCGATGATTCCGATGACGAAGAAATGGCTATGTTTAATACCGCTGCTATAGACGAACCCGATGATGAAGAAATGGCTATATTTAATACCGCTGCTATAGACGAACCTGATGCCGGTTCAGACACATACTATTCTGGAGAATCGGAGGAGCAAGAATGGAATCCTATAGAGCCATCATGGTTATCAATGATTCTGCATTCTAGTATGGAAGAAGATTCTAGTTCCAGTGAGGGGGACCTTTAG 1731 0.4084 LKSTKITAHKGVSVNSGRGGRKERCYCYTQLQAGFSNALCLDANSIDRPMSKRYCKFFARGACVKGEQCEYSHDRKDSLICKFYQKGFCAYGSRCRYKHVKASQAQSSENGHQFLASDSMVARITSPRGTSNWVPKAAELSVTDKHAKILKRKHRDMQKNGDAGESSTALPPEHFFCTFSASNCPFGEKCSYIHGDKCVYCKKFCLHPTDPKERKKHQRSCEKKGKYLQTLNDSQEIECNICLEHVLSKPKASDRKFGVLPECDHAFCISCIRNWRNSAPSSAMGSNNAVRTCPVCRKLSYYVIPSNIWYSTKEEKEEIIDNYKTNCKLIDCKHFDFGNGNCPFGNNCFYKHTVKPGSYTWIHHRPPPPPRNPRNMNVLNQFGFESEEFDSIIPDFEFFNDMDPFETMPDGSGLFDFEDSDGEMDSFNLAARPEFLNFGSDTISSEESDPFDFMLLAEGLDGSGWSVPEDSEDDDGGGMGIMPPSEMLCGCSGSSYPDDSDDEEMAMFNTAAIDEPDDEEMAIFNTAAIDEPDAGSDTYYSGESEEQEWNPIEPSWLSMILHSSMEEDSSSSEGDL 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto4g2170 576 MobiDBLite consensus disorder prediction 529 549 - -
Sto4g2170 576 SMART ring_2 239 296 IPR001841 -
Sto4g2170 576 Gene3D - 78 123 - -
Sto4g2170 576 SUPERFAMILY RING/U-box 231 303 - -
Sto4g2170 576 Pfam Zinc finger, C3HC4 type (RING finger) 239 296 IPR018957 GO:0046872
Sto4g2170 576 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 80 100 IPR000571 GO:0046872
Sto4g2170 576 ProSiteProfiles Zinc finger C3H1-type profile. 326 355 IPR000571 GO:0046872
Sto4g2170 576 CDD RING-HC_MKRN 239 297 - -
Sto4g2170 576 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 225 316 IPR013083 -
Sto4g2170 576 Pfam RNA-binding, Nab2-type zinc finger 177 195 - -
Sto4g2170 576 Pfam RNA-binding, Nab2-type zinc finger 55 73 - -
Sto4g2170 576 Pfam RNA-binding, Nab2-type zinc finger 331 352 - -
Sto4g2170 576 SUPERFAMILY CCCH zinc finger 49 74 IPR036855 GO:0046872
Sto4g2170 576 ProSiteProfiles Zinc finger C3H1-type profile. 49 74 IPR000571 GO:0046872
Sto4g2170 576 SMART c3hfinal6 77 101 IPR000571 GO:0046872
Sto4g2170 576 SMART c3hfinal6 50 75 IPR000571 GO:0046872
Sto4g2170 576 SMART c3hfinal6 171 196 IPR000571 GO:0046872
Sto4g2170 576 SMART c3hfinal6 326 354 IPR000571 GO:0046872
Sto4g2170 576 PANTHER MAKORIN-RELATED 50 571 IPR045072 -
Sto4g2170 576 ProSitePatterns Zinc finger RING-type signature. 263 272 IPR017907 -
Sto4g2170 576 ProSiteProfiles Zinc finger RING-type profile. 239 297 IPR001841 -
Sto4g2170 576 Gene3D - 45 77 - -
Sto4g2170 576 ProSiteProfiles Zinc finger C3H1-type profile. 171 197 IPR000571 GO:0046872
Sto4g2170 576 SUPERFAMILY CCCH zinc finger 77 99 IPR036855 GO:0046872
Sto4g2170 576 ProSiteProfiles Zinc finger C3H1-type profile. 75 102 IPR000571 GO:0046872
Sto4g2170 576 PANTHER MAKORIN RING-ZINC-FINGER PROTEIN 50 571 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto4g2170 Sto-Chr4 23095665 23099734 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Sto4g2170 zf-C3HC4 9.1e-08 CL0229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto4g2170 K15687 - gmx:100788886 501.516
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto4g2170 4 23095665 23099734 Sto4g2170 4 23095665 23099734 ECH