Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto4g2142 ATGGCGTCCAGGAATCAACCTATTTCTTCCATGAACCCTATGCAGCACCGAGACACAACCATCAAAGTTCGTGTTGTTCGTTTGCGGTGTGTTCCGCCTTACTCCTCCAATACAAGCAAACCTAATCCAGGTGTTGTTGCAATTCAAATGGTTTTATGTGACGCTGAGTCTGCTACACATCAGTTTCATTCGAAGGCCTCTACTACAATTCCTGTAGACATCCGATTACATAGTATTTTGGGGAGCAGGTGGTCTACAATTGATGCTAGCTTGCTGGGAAGAACAAAGGACGAGATCAAGAACTATTGGAATACACACATCAAGAAGAGGTTAATGAAGATGGGGATTGATCTATCAATAAGTCTACCATATCATCAGCTTAAACTTAAGGTTGGTGCACCAATAATGCTTCTCCGTAATATTTACCGTTCAATGGGTTTATGCAACGAAACACGACTGATATTAACTAGGATGTGTGAACACGTGATTGAAGCATCTATCATGTCAGGTAAGTGTGAACACGTGATTGAAGCATCTATCATGTCAGGTAAATTTGCAGGGGAGAAGGTCCTTATAGCACGTATGTTAATTAGTCCTTCTGATTATAAATtgcctttcaagtttcaacgccTCCTCTCATTTGCTATGACAATTAACAAGAGTCAAGGACAAACATTGTCTAACGTTGGTATATATCTTCCTCGCCCTGTTTTTAGCCATGACCAGCTTTATGTTGCTGTATCGCATGTTACAAAACGATCAAGTTTGAAGATTCTTGTGACCAATGCCAACCGTCGTCAGATGAGAACTACTACAAATGTTGTCTTCAAAGAGATATTCCAAAATGTCAAATAG 855 0.3918 MASRNQPISSMNPMQHRDTTIKVRVVRLRCVPPYSSNTSKPNPGVVAIQMVLCDAESATHQFHSKASTTIPVDIRLHSILGSRWSTIDASLLGRTKDEIKNYWNTHIKKRLMKMGIDLSISLPYHQLKLKVGAPIMLLRNIYRSMGLCNETRLILTRMCEHVIEASIMSGKCEHVIEASIMSGKFAGEKVLIARMLISPSDYKLPFKFQRLLSFAMTINKSQGQTLSNVGIYLPRPVFSHDQLYVAVSHVTKRSSLKILVTNANRRQMRTTTNVVFKEIFQNVK 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto4g2142 284 Pfam PIF1-like helicase 121 157 IPR010285 GO:0000723|GO:0003678|GO:0006281
Sto4g2142 284 PANTHER DNA HELICASE-RELATED 121 283 - -
Sto4g2142 284 CDD SANT 74 107 IPR001005 -
Sto4g2142 284 Gene3D - 69 128 - -
Sto4g2142 284 SUPERFAMILY Homeodomain-like 75 111 IPR009057 -
Sto4g2142 284 CDD SF1_C_RecD 209 256 - -
Sto4g2142 284 PANTHER ATP-DEPENDENT DNA HELICASE 121 283 - -
Sto4g2142 284 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 101 281 IPR027417 -
Sto4g2142 284 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 74 111 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto4g2142 Sto-Chr4 22877170 22883071 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto4g2142 74 117 MYB Transcription Factor Family AT4G05100 72.727 3.38e-16 75.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto4g2142 - K15255 ini:109179586 179.874