Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto4g2120 ATGGCTTTATACTCTTCCCTATTCTCACCTCCCAATCTTCTTTCCAATCAAACTACTAAATCCTTCACAATCCCATCAAATTTCTCgcatcaagttttgaaaaccacCCACTTACAGCCCATTCTCAAATCTTCGCCTTCTCTGACAGTTTCCACTCCCAGAACCTACCGGAGACTCTTCGCTGTTGCCGAAGAAACTGCAGTTACCTCGGTGGACCCTACGTCTGAGGCGGCGAGGAAGCTTTACATTGGGAACATTCCACGCAATGTCAATAATGCTGAGCTTTCACGGATTGTTGAAGAGCATGGTGCTGTTGAGAAAGCGGAGGTTATGTATGACAAGTATTCTGGAAGGAGTCGTCGCTTTGCATTTGTTACAATGAAGACTGTTGAGGATGCAAATGCAGTAATTGAGAAGCTAAATGGCACTGAAATTGGAGGTCGTGAGATCAAAGTAAACATAACAGAAAAACCTTTGTCAACAGTGGATATGTCTATTCTACAGGCAGAGGAATCTCAATTTATTGATAGTCCCCACAAAGTATATGTAGGAAATCTAGCAAAGACAGTAACAACAGATATTCTTAAAGACTTCTTCTCTACAAATGGAAAAGTTCTCAGTGCCAAGGTTTCACGGGTTCCCGGGACCTCAAAATCCACCGGGTTTGGTTTTGTCTCGTTTTCTTCAGATGAGGATGTAGAAGCTGCAATCTCATCTTTCAACAATTCTTTGTTAGAAGGGCAACGGATTCGTGTGAATAAggcatag 768 0.4089 MALYSSLFSPPNLLSNQTTKSFTIPSNFSHQVLKTTHLQPILKSSPSLTVSTPRTYRRLFAVAEETAVTSVDPTSEAARKLYIGNIPRNVNNAELSRIVEEHGAVEKAEVMYDKYSGRSRRFAFVTMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLSTVDMSILQAEESQFIDSPHKVYVGNLAKTVTTDILKDFFSTNGKVLSAKVSRVPGTSKSTGFGFVSFSSDEDVEAAISSFNNSLLEGQRIRVNKA 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto4g2120 255 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 79 157 IPR000504 GO:0003723
Sto4g2120 255 PANTHER OS02G0815200 PROTEIN 1 255 - -
Sto4g2120 255 Gene3D - 61 164 IPR012677 -
Sto4g2120 255 SUPERFAMILY RNA-binding domain, RBD 72 157 IPR035979 GO:0003676
Sto4g2120 255 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 81 151 IPR000504 GO:0003723
Sto4g2120 255 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 181 251 IPR000504 GO:0003723
Sto4g2120 255 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 179 255 IPR000504 GO:0003723
Sto4g2120 255 CDD RRM_HP0827_like 80 157 - -
Sto4g2120 255 SUPERFAMILY RNA-binding domain, RBD 174 255 IPR035979 GO:0003676
Sto4g2120 255 Gene3D - 165 255 IPR012677 -
Sto4g2120 255 SMART rrm1_1 80 153 IPR000504 GO:0003723
Sto4g2120 255 SMART rrm1_1 180 253 IPR000504 GO:0003723
Sto4g2120 255 PANTHER 30S RIBOSOMAL PROTEIN 2, CHLOROPLASTIC 1 255 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto4g2120 Sto-Chr4 22693034 22696427 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto4g2120 56 255 Eukaryotic Initiation Factors Gene Family AT1G22760 27.184 1.17e-11 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto4g2120 K13126 - qsu:112004862 354.755
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto4g2120 4 22693034 22696427 Sto4g2120 4 22693034 22696427 ECH