Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto4g2000 ATGGTAAAGGTTTCGGGTATTGTTTCGGTTAAAATCACAGACAATCTCACTCTTCTGAATGTTCTTCATGTCCCTGCAGTAACTTGCAACTTATCTGTTAGTAAGCTCACGCGAGATAACCACTATGATGCTAACTTCAAATCTCATGGTTGCTTCTTTAAGGACCTAGCATCAGGGAAGATGATTGGCAGTGCTGAGGAGTGTAATGGTCTCTACCTTCTAGGAAACTCTATTTTTCCAGCTTCTAATAAAATTGTACTTAGTGTCACTTGCCCTCCGAATATTCTCTTGTGGCACTATAGACTAGGACATCCCAATTTTCATTACATGCAAAAGTTGACTTGGCCTGGGAATTTTGGCCTCAGTTTGCTTTATTGGAGTTGTATTGATCTCATGTCTTTTGGTGTAGACCTTCTCAAAACTCTTATCATGGGTTTGGTTGGGCTATGTGCTTGGCCTACCCATGGAAGTGGAACTAAAGAGTTGTTGGAGGAACTCAATCTATTCTTTGCTGAAAGGTTGAGGTTCAGCAGTAGTTTCCACATTATGAGCACCAGTTGGTCGGGACCGTGGCTTCCAGTTAGGGGGTTTGCCATGTATCTCCTAGCAGCAGATGAAAAAAAGGACGAATTGACGCCACTGTCAATAATTGTTGCCGTTAAGCTTGTGTCCGGCGATCAAAATAGGTGCTGTATCAGAGTAATTGGCTGCTGTTTCTGCACAGACAGCCTTGTTGCTGTCTTGTTCCGCCGCACCCATGGTTCCAAACACCATACGCCGCCGGTTGCTGGGACTCGCCATGAAGAAATTAGGTGGGAATTGGACAAACTGTCTATCCTCAAAGACCTGGACAGATTGAATGTGACGTTCCATCACCCAATTGACCGCTCAGTACCATCAGTGTTAAATTCTGCTGCACAGGAAACTGTTAAACTCACTCTTGCGGGGTTACCAAGGAGAGAGGGTTCTGTGATCTGTccatattatttaaaaactgGCGCTTGCAAGTTTGGTGCCACCTGCAAGTTTGACCACCCACCTCCAGGAGAAGTTATGGAGAAGGCAAAGTCACAAACAACATCTGCATCCAACGGAGAAGGGGAAGCAAATGACAATGAGAAAGGGGCTGATTCTGTTCAGTAA 1143 0.4427 MVKVSGIVSVKITDNLTLLNVLHVPAVTCNLSVSKLTRDNHYDANFKSHGCFFKDLASGKMIGSAEECNGLYLLGNSIFPASNKIVLSVTCPPNILLWHYRLGHPNFHYMQKLTWPGNFGLSLLYWSCIDLMSFGVDLLKTLIMGLVGLCAWPTHGSGTKELLEELNLFFAERLRFSSSFHIMSTSWSGPWLPVRGFAMYLLAADEKKDELTPLSIIVAVKLVSGDQNRCCIRVIGCCFCTDSLVAVLFRRTHGSKHHTPPVAGTRHEEIRWELDKLSILKDLDRLNVTFHHPIDRSVPSVLNSAAQETVKLTLAGLPRREGSVICPYYLKTGACKFGATCKFDHPPPGEVMEKAKSQTTSASNGEGEANDNEKGADSVQ 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto4g2000 380 MobiDBLite consensus disorder prediction 354 368 - -
Sto4g2000 380 Pfam GAG-pre-integrase domain 70 114 IPR025724 -
Sto4g2000 380 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 8 289 370 - -
Sto4g2000 380 MobiDBLite consensus disorder prediction 346 380 - -
Sto4g2000 380 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 323 347 IPR000571 GO:0046872
Sto4g2000 380 Gene3D - 287 366 - -
Sto4g2000 380 ProSiteProfiles Zinc finger C3H1-type profile. 320 348 IPR000571 GO:0046872
Sto4g2000 380 PANTHER CCCH ZINC FINGER/TIS11-RELATED 289 370 IPR045877 GO:0003729
Sto4g2000 380 SUPERFAMILY CCCH zinc finger 323 347 IPR036855 GO:0046872
Sto4g2000 380 SMART c3hfinal6 320 347 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto4g2000 Sto-Chr4 21115916 21123167 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto4g2000 290 348 C3H Transcription Factor Family AT1G04990 45.763 2.23e-10 60.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Sto4g2000 gag_pre-integrs 6.7e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto4g2000 - - zju:107424717 136.732
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto4g2000 4 21115916 21123167 Sto4g2000 4 21115916 21123167 ECH