Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sto4g1999 | atggcAAATCAACTCTATCACTACGGTTATAGCCCTACAAACGGAGGAGCTTCACCGTCTTCCCCTGCTGCTGCCGCCGTCGTCGGCGCCGCCACTTCCCTCTCCTCCGGCCGATACCTTCCCACGGATATGTATTTCCCACAGCGCAAAGACTCCTCCTCTCTCTGGTATCCCTCTTACGCCGCTTCCGACATTGACATTGGACCGCCTGGTGTCGCCACCAGAAACTCCACCTCCGCCGTCGGAGCCACATCTTCCACCACTAGCAATTTGCTATCCCAAGCTTCTTGGCCTGCTGCTATTGCTGCCGCAGCCGCTGCTGCTAATGCTGGAGACCCGATTGCTACCAACATGAAACGTTCTTCTGATGCGCTCTATCATCCAACTGCTTTGCTTGCCCATAACACAATTGGGCAAAGTGAAGCTTGGTATTCTACAAGCTCATTAACAAAGCGCCCTAGATACGAGAATGCAAGCAATTTGCCTATATATCCACAGAGGCCAGGAGAGAAGGACTGTGCCCACTATATGCTCACAAGAACCTGTAAATTTGGAGATAGCTGCAAATTTGACCATCCTATTTGGGTTCCTGAGGGAGGAATCCCAGATTGGAAAGAGGTTCCGAATGTTGCAACTGAGACTCTTCCTGAGAGACCAGGAGAACCAGATTGTCCTTACTTTGTAAAAACTCAGAGATGCAAATTTGGTCCTAGGTGCAAGTTTAATCATCCAAAGGATTTGTTTGAAAATGCTGATGTTTCTGGCTTACCTGAGAGGCCTACGGAGCCTCCGTGTGCGTTCTACATGAAAACGGGAAGATGTAAATTTGGTGTTACCTGTAAATTTCATCACCCAAGAGATATCCAGATTCAGCTGTCAGTAGAACAGAATGGTGCTTTTGAGCATACTCAGTTCGCTGCTAATGCAGAGGGGGCAACAGGAGATACAACGCTATCTAATCCTTTTATGTCATACACTTATCCATCATTACAGAATAGCAAAGGGCTCCCTATAAGACTGGGTGAAGTGGATTGTCCTTTCTACATGAAAACTGGCAGTTGCAAGTATGGTGCTACTTGCCGTTACAATCATCCTGACTGGAGTGTTGCTGGGTTTGGCTATTCTGTTTTGACATCAGCAGCAGCTAATCTTAACCTTGGAATTGTTAATCCAGCTGCATCAATTTATCAAGCTATTGACCCCACACTCTCAAATGCAACGCGGTCCGACATGGCAAGAGGTAAGTCTCTCTATTACCTAGCTCTACCTTGTGCTGCCACTGAAGGGTTTGCCGCTGCCGAAGCCGTTGGGTCTCACCGTCGGGATCGTCGCCGTTGGTGCCTACCGTTGGTACCATTGCCGGTGGCTTCTGACGTCGAAAGCTGTCTCCCATCTCGGTTTGGCAATATGGAGACTAGTGGGTGTTTATACATTACTGTGGCTTGTGGAAGTGCAGTGTATTTTGGTTTTGGGCAAGGAGTTTGGGAAGTCCATTATATCTCTACTGGTACCCAAGCCTTCGAGTGGGGGGAAAGGACGCAAGGAGAGGCAACTGTTAGGTCTCTTATAGCCTCGTTTGCTGAAGTCATGAAGGGGAGGAGAGTTGGGGATGGGAAGGGAGAAGATGCCTACACCAGAAAATACAAACATTCTAGAGAGTGTCATATTCCAGTAGAAAGAAGGCCTCGCACACAAGGATTGGCCCTTACAAATCTGAAGCCAAGGGTTGCGCAAGAGATTGAAAAGCCACAACAGGCTGTAAACAGACCATTAGCGCTGACATGGGTGCCAAAAAAGGTAGGGAATGCTACTAATCACATACATAGTGCTGAGGAAGACATAATAAGGGAAGAAAGCGGTGTGGGCAGCTCAAAAAAGTTAGAGGGTAATCACATACATAGTGCTGAGGAAGACATAATAAGCATTGAGGGTAGTCGCCTATCTAGTTCTTCTCCTAAAGTGAAGGAGGAAATGCAAGTTGGGAAGGACTGTGAAGATACTCAATATAGAGCCACTGACCCAAGCGGCTCAAGGAAGATACAAGATACCCAATTTGTACTAAGGCCTTCAAAAATGGATAGGGAATCATCATTTAAGGGTGATTTAGACGATGAAATACTTGATGATTTGAATTTTTTCTGA | 2142 | 0.4687 | MANQLYHYGYSPTNGGASPSSPAAAAVVGAATSLSSGRYLPTDMYFPQRKDSSSLWYPSYAASDIDIGPPGVATRNSTSAVGATSSTTSNLLSQASWPAAIAAAAAAANAGDPIATNMKRSSDALYHPTALLAHNTIGQSEAWYSTSSLTKRPRYENASNLPIYPQRPGEKDCAHYMLTRTCKFGDSCKFDHPIWVPEGGIPDWKEVPNVATETLPERPGEPDCPYFVKTQRCKFGPRCKFNHPKDLFENADVSGLPERPTEPPCAFYMKTGRCKFGVTCKFHHPRDIQIQLSVEQNGAFEHTQFAANAEGATGDTTLSNPFMSYTYPSLQNSKGLPIRLGEVDCPFYMKTGSCKYGATCRYNHPDWSVAGFGYSVLTSAAANLNLGIVNPAASIYQAIDPTLSNATRSDMARGKSLYYLALPCAATEGFAAAEAVGSHRRDRRRWCLPLVPLPVASDVESCLPSRFGNMETSGCLYITVACGSAVYFGFGQGVWEVHYISTGTQAFEWGERTQGEATVRSLIASFAEVMKGRRVGDGKGEDAYTRKYKHSRECHIPVERRPRTQGLALTNLKPRVAQEIEKPQQAVNRPLALTWVPKKVGNATNHIHSAEEDIIREESGVGSSKKLEGNHIHSAEEDIISIEGSRLSSSSPKVKEEMQVGKDCEDTQYRATDPSGSRKIQDTQFVLRPSKMDRESSFKGDLDDEILDDLNFF | 713 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sto4g1999 | 713 | Gene3D | - | 126 | 206 | - | - | |
| Sto4g1999 | 713 | Gene3D | - | 327 | 370 | - | - | |
| Sto4g1999 | 713 | PANTHER | CCCH ZINC FINGER/TIS11-RELATED | 84 | 401 | IPR045877 | GO:0003729 | |
| Sto4g1999 | 713 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 220 | 245 | IPR000571 | GO:0046872 | |
| Sto4g1999 | 713 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 262 | 286 | IPR000571 | GO:0046872 | |
| Sto4g1999 | 713 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 342 | 365 | IPR000571 | GO:0046872 | |
| Sto4g1999 | 713 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 169 | 193 | IPR000571 | GO:0046872 | |
| Sto4g1999 | 713 | Gene3D | - | 215 | 298 | - | - | |
| Sto4g1999 | 713 | SUPERFAMILY | CCCH zinc finger | 263 | 287 | IPR036855 | GO:0046872 | |
| Sto4g1999 | 713 | ProSiteProfiles | Zinc finger C3H1-type profile. | 167 | 195 | IPR000571 | GO:0046872 | |
| Sto4g1999 | 713 | ProSiteProfiles | Zinc finger C3H1-type profile. | 218 | 246 | IPR000571 | GO:0046872 | |
| Sto4g1999 | 713 | SUPERFAMILY | CCCH zinc finger | 223 | 246 | IPR036855 | GO:0046872 | |
| Sto4g1999 | 713 | PANTHER | ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 37 | 84 | 401 | - | - | |
| Sto4g1999 | 713 | ProSiteProfiles | Zinc finger C3H1-type profile. | 259 | 287 | IPR000571 | GO:0046872 | |
| Sto4g1999 | 713 | SUPERFAMILY | CCCH zinc finger | 343 | 366 | IPR036855 | GO:0046872 | |
| Sto4g1999 | 713 | MobiDBLite | consensus disorder prediction | 645 | 680 | - | - | |
| Sto4g1999 | 713 | ProSiteProfiles | Zinc finger C3H1-type profile. | 339 | 367 | IPR000571 | GO:0046872 | |
| Sto4g1999 | 713 | SUPERFAMILY | CCCH zinc finger | 168 | 194 | IPR036855 | GO:0046872 | |
| Sto4g1999 | 713 | SMART | c3hfinal6 | 218 | 245 | IPR000571 | GO:0046872 | |
| Sto4g1999 | 713 | SMART | c3hfinal6 | 259 | 286 | IPR000571 | GO:0046872 | |
| Sto4g1999 | 713 | SMART | c3hfinal6 | 339 | 366 | IPR000571 | GO:0046872 | |
| Sto4g1999 | 713 | SMART | c3hfinal6 | 167 | 194 | IPR000571 | GO:0046872 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Sto4g1999 | Sto-Chr4 | 21101491 | 21108815 | Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Sto4g1999 | 164 | 370 | C3H Transcription Factor Family | AT1G04990 | 34.701 | 5.93e-39 | 147 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | C3H | Sto4g1999 | zf-CCCH | 2.5e-10 | CL0537 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sto4g1999 | - | - | gmx:100801417 | 479.944 |