Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto4g1972 ATGGCAGCACTTATCTCGGCACGGTTGGTCCTGCTTGGTGGAGAATCACTGTCCTTGCGAAGGCTCTTGCCCACTTATAGGACAGCTTGGTTGCACAGCCGTGTCCATTCTTCGAGTCCGATAGCGCCTCAACCTGCTTCCCCTACTCCTTTAAGCCTTGATTTCAATAGTGAAAATGAAACCAGGAAAAAAGACAAAGTTAATAAACTAAAGCAGTTGGGCTCCTCTTCTGTAGTCTCAAAGAGCAACAAAGCAAAGGCCATCGGTATCAATGCAGTTAAAGCAGCTGGAACCATAAAGAAGCAGCCGATAATAGAGTCTGCTCCATTTGCTGCAAAGTCTTTCTCTGAACTTGGCCTCCCTCATTTGTTGATTGAGAGATTAGAAAAGGAAGGTTTTACAGTACCAACTGAAGTACAGTCTGCAGCAATTCCTACAATTCTGAAGAATCATGATGTCATTATTCAGTCTTACACAGGTTCAGGGAAAACATTGGCTTATCTCCTTCCCATACTATCTAATGTGGGCCCGTTGAGGAACAAAACATCTGAAGGTAACAGTGATGGGAAGAAAATGGGAATAGAAGCAGTAATTGTTGCCCCCTCTAGGGAGCTAGGCATGCAAATAGTGAGGGAATTTGAGAAGATACTTGGACTTGATAACAAAAAAGCAGTTCAACAGCTTGTGGGAGGCGCAAATCGATCCAGACAGGAAGAAGCCCTGAAGAAAAATAAACCCGCCATTGTTGTTGGCACACCTGGTAGAATAGCAGAACTCAGTGCAGCTGGAAAACTCCACACCCATGGTTGTCGTTTTTTGGTCCTAGATGAAGTTGACGAACTCCTATCGTTTAACTTCCGGGAGGACATGCATCGTATACTAGAACACGTGGGAAGGAAACCAGGTGCAGCAGATCCACGTGGGCAGAATAGCGCAATTCCTAGACGAGCTGAGCGTCAGACAATTATGGTATCTGCGACCGTTCCCTTTTCTGTTGTACGGGCAGCCAGGAGCTGGGGCCGCGATCCATATCTTGTCCAAGCCAATAAAGTTGCCCTGCTTGAAACCGTCTCTCCTTCCAACCCGGTCAATTTGTCAGGGTCGTCATCTCCTAGCTCAAATTCTAACTCAACCACGTTAACACAGGCGACAGTAGAGAGTCTACCTCCTGCACTGAAACATTATTATTGTGTCACAAGGTTACAGCACAAAGTTGATACCTTGAGAAGGTGTATTCATGCATTAGATGCCAAATTTGTTATAGTTTTCATGAACCATATAAAGCAACTTAAGGATGTTGTCTTCAAGCTAGAAGCGCGTGGGATTAAAGCTGCCGAGTTACATGGGGATCTCGGGAAGCTTGCTAGGTCGACTACTCTGAAAAAGTTCAAGAGTGGTGGTGAGGTGAGAGTACTGGTGACAAATGAGCTATCAGCAAGGGGTTTGGATGTGGCAGAGTGTGATCTTGTGGTTAATCTAGACTTACCCACAGACTCGATTCACTATGCACACCGAGCTGGCCGGACGGGTCGGCTCGGTAGGACTGGTACAGTGCTTTCAATATGTGAGGAGCCAGAAGTGTTTGTCATGAAGAAACTACAGAAACAACTTGGAATACCAATAGTGTGCTGTGAGTTTACAGAGGGAAAGCTGCTTGTTATTGAAGAAGAGAAAATGCTAAACACTGTGAGATGA 1695 0.4549 MAALISARLVLLGGESLSLRRLLPTYRTAWLHSRVHSSSPIAPQPASPTPLSLDFNSENETRKKDKVNKLKQLGSSSVVSKSNKAKAIGINAVKAAGTIKKQPIIESAPFAAKSFSELGLPHLLIERLEKEGFTVPTEVQSAAIPTILKNHDVIIQSYTGSGKTLAYLLPILSNVGPLRNKTSEGNSDGKKMGIEAVIVAPSRELGMQIVREFEKILGLDNKKAVQQLVGGANRSRQEEALKKNKPAIVVGTPGRIAELSAAGKLHTHGCRFLVLDEVDELLSFNFREDMHRILEHVGRKPGAADPRGQNSAIPRRAERQTIMVSATVPFSVVRAARSWGRDPYLVQANKVALLETVSPSNPVNLSGSSSPSSNSNSTTLTQATVESLPPALKHYYCVTRLQHKVDTLRRCIHALDAKFVIVFMNHIKQLKDVVFKLEARGIKAAELHGDLGKLARSTTLKKFKSGGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRTGTVLSICEEPEVFVMKKLQKQLGIPIVCCEFTEGKLLVIEEEKMLNTVR 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto4g1972 564 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 144 346 IPR014001 -
Sto4g1972 564 CDD SF2_C_DEAD 392 522 - -
Sto4g1972 564 SMART helicmild6 431 513 IPR001650 -
Sto4g1972 564 CDD DEADc 124 347 - -
Sto4g1972 564 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 47, MITOCHONDRIAL 27 541 - -
Sto4g1972 564 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 107 347 IPR027417 -
Sto4g1972 564 MobiDBLite consensus disorder prediction 37 56 - -
Sto4g1972 564 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 47, MITOCHONDRIAL 27 541 - -
Sto4g1972 564 Pfam Helicase conserved C-terminal domain 407 513 IPR001650 -
Sto4g1972 564 Pfam DEAD/DEAH box helicase 137 332 IPR011545 GO:0003676|GO:0005524
Sto4g1972 564 MobiDBLite consensus disorder prediction 361 381 - -
Sto4g1972 564 Gene3D - 389 547 IPR027417 -
Sto4g1972 564 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 113 141 IPR014014 GO:0003724
Sto4g1972 564 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 268 540 IPR027417 -
Sto4g1972 564 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 407 552 IPR001650 -
Sto4g1972 564 Gene3D - 76 349 IPR027417 -
Sto4g1972 564 SMART ultradead3 132 357 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto4g1972 Sto-Chr4 20935201 20936895 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto4g1972 114 541 Eukaryotic Initiation Factors Gene Family AT3G19760 24.299 7.84e-40 148
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto4g1972 - - gmx:100812968 746.503