Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto4g1877 ATGGCTCAGCAGTTTGATGCAGTACACGCAATTACCAAGCATCAAAAAAACTGGACCATCAAAGTCCGTGTTGTACGAATGTGGGATACTCCACCTTTTCCCAAAAATTGCCCAAACAACGGCATCGATCTCGTACTATGTGACAAGGATGAAGGTGGAGTATACATACTTTCGGAATTCAATGTGGTTGCTGCTAATACTTCTTTTCGTCCTACTATCCACGACTATAAGATGAACTTCCAATTCCAAACAAGAATTGCGCAGACTACAGATGATGATGTTATTGGACTAGTCTGCAACGTTTACGGTGTCAATCAATCCAACCCTGATGATGGAAAAACAAAACGAGTTACCATTGATGTCGAGGACGCACaGAAAACAATGTTATCCATCACACTGTGGGGACATTTTGTTGACCAAATTGTTGATTTCATGGCAAACTGGACCGGAGCGGCTGTTGTTGTTATTATCCAATTTTGTAAAATCAAAGAGTACAGTGGTACTCGATCCTTGACAAATTCAATGTATGCAACGAGGATGTATATCAACTCCGACTTAGAAGAAGTACTGCATTTCCATCAATGTCTACAACCAGAAGATATGACGAGCCCAATTAATCCAAATGGGACTACTTCAATGGTAATAGCATCTCCCATTGATGGATCATTTACTGGAGTTCCTCTTATACCAGTAGATGAAATTCATCATAGGGCTGACGGATCTGTTTCATGTATTATAGCCCAAGTCGTTGGGATTAACAGTGAAAAAGGTTGGTACTATGATGCATGCAAGAAATGTGCAAAGAAACTTGACCCCGATGGATCCATTTTCTTCTGTAACAAATGTCAGGTTCTGGTGAATGCATGTACAACAAGGTACAAGTTAGAACTAATGGTGATGGACGAATTTGGGACAACAAATATCACAGTGTTTGACCGTGACGTCGCAAACTTTATTACCATGCCTGCTGTAGATTTGCTGCAAGATCACATTCAGGTATCTAACTGGAATGGTATCAAGTCATTCACTGCGCAGCGACTTACAAACGATCCGGTCATCACTGATAAGTTCATGTCTTATCGTTTTGCAAAGAGTAAAGATGTGAACAAGTCCGATGTTGTAGGTTCATCAGTCGAGACGACATCTGTCATTGATATCGCGGTGCGTCCGCTTACGTTCCCTGATGGTGTTGCTTCACCATATTCTGTGACGACAAGTAGTGGCAAAAGATCGTCCTTTGAAAAGTCTGGAGAAGGTTACTCATCGACTAAATGTGTGAAGAATTTGGACATTTCCCTCAAGAAGATTAAGTTggagaaaatttga 1326 0.4065 MAQQFDAVHAITKHQKNWTIKVRVVRMWDTPPFPKNCPNNGIDLVLCDKDEGGVYILSEFNVVAANTSFRPTIHDYKMNFQFQTRIAQTTDDDVIGLVCNVYGVNQSNPDDGKTKRVTIDVEDAQKTMLSITLWGHFVDQIVDFMANWTGAAVVVIIQFCKIKEYSGTRSLTNSMYATRMYINSDLEEVLHFHQCLQPEDMTSPINPNGTTSMVIASPIDGSFTGVPLIPVDEIHHRADGSVSCIIAQVVGINSEKGWYYDACKKCAKKLDPDGSIFFCNKCQVLVNACTTRYKLELMVMDEFGTTNITVFDRDVANFITMPAVDLLQDHIQVSNWNGIKSFTAQRLTNDPVITDKFMSYRFAKSKDVNKSDVVGSSVETTSVIDIAVRPLTFPDGVASPYSVTTSSGKRSSFEKSGEGYSSTKCVKNLDISLKKIKLEKI 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto4g1877 441 Gene3D - 229 370 IPR012340 -
Sto4g1877 441 MobiDBLite consensus disorder prediction 401 421 - -
Sto4g1877 441 Gene3D - 73 203 IPR012340 -
Sto4g1877 441 Pfam Replication protein A OB domain 93 180 IPR031657 -
Sto4g1877 441 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 22 326 - -
Sto4g1877 441 CDD RPA1_DBD_B_like 93 192 - -
Sto4g1877 441 CDD RPA1_DBD_C 232 330 IPR013955 -
Sto4g1877 441 PANTHER REPLICATION FACTOR A 1, RFA1 22 326 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Sto4g1877 441 SUPERFAMILY Nucleic acid-binding proteins 5 91 IPR012340 -
Sto4g1877 441 CDD RPA1_DBD_A_like 19 86 - -
Sto4g1877 441 Pfam Replication factor-A C terminal domain 246 328 IPR013955 -
Sto4g1877 441 SUPERFAMILY Nucleic acid-binding proteins 92 198 IPR012340 -
Sto4g1877 441 SUPERFAMILY Nucleic acid-binding proteins 235 328 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto4g1877 Sto-Chr4 19566149 19568661 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto4g1877 4 326 Core DNA Replication Machinery Family AT5G45400 20.403 1.12e-12 68.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto4g1877 - - bvg:104885244 160.229