Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto4g1869 ATGTTCCCTCCAAATCCAAAGAAGCCTTCTTCTATGAATTCCCAAGATAGATCATCCATGTGTGTTCAGCCGGACTCCGGCCTTGTCCTCACCACCGATCCCAAGCCCCGGCTTCGCTGGACCGTCGAGCTCCACGAACGCTTCGTGGACGCTGTTACTCAGCTTGGAGGACCTGATAAGGCAACTCCTAAAACCATCATGAGGGTTATGGGTGTGAAGGGTCTTACACTTTACCACCTCAAGAGCCATCTTCAGGTTCAGAAACACCTTCAGCTGAGGATTGAGGCTCAAGGGAAATACATGCAAAGCATATTGGAGAAGGCTTACCAAACACTTGCAGGTGAAAATTTGAAGGGTGGTGGTATCAACATTAATGgagctcatcatcatcatcatcaaggcCACAATAATAATATCAATATGATCCCTCAAGATTTTGGCTCAATCCCTCTTCATAACAACAGCAACAACTTCCCATCATTTCAAGAGCTCAATATTTTTGGTGCTAGTACTACTACTGACCAgcttgatcatcatcatcatcttcatcaccatcatcatcaccagcAGCAGCACCAACTCATGCCAAGCAATGCCACCATTAGTAATGACCAGAGCTTGATGAAGAACAAGAGGCCTCTGATTTGGAACAATGAAGAATTGAGGCTCCATCAAGACCTAGGAGGAGGAACACCATCTTCATGTCTTGATCCTCACAAcaatagtaatagtaataataataataataataatgacccTTTCATCAAAGAAGCCACTGGTGGTGATCATCAGAACATGAATATTGATCAGATTTCAGAGATTTATGACACTAAGCCCTTACTCCAAGGGGATACTACCCTAGGGGATGGGAATAGTAGTAATGGCAAGAAGTTTGATCCTAACTCAGCTAAGCTTGAAAGGCCATCACCAAGAAGGGCACCACCTACCCTTCAGCAGGCAGATCAAAGGATGAGCCCAATGATTAGTACTGGAGGCACACCATTTTAG 1008 0.4048 MFPPNPKKPSSMNSQDRSSMCVQPDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQVQKHLQLRIEAQGKYMQSILEKAYQTLAGENLKGGGININGAHHHHHQGHNNNINMIPQDFGSIPLHNNSNNFPSFQELNIFGASTTTDQLDHHHHLHHHHHHQQQHQLMPSNATISNDQSLMKNKRPLIWNNEELRLHQDLGGGTPSSCLDPHNNSNSNNNNNNNDPFIKEATGGDHQNMNIDQISEIYDTKPLLQGDTTLGDGNSSNGKKFDPNSAKLERPSPRRAPPTLQQADQRMSPMISTGGTPF 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto4g1869 335 MobiDBLite consensus disorder prediction 175 195 - -
Sto4g1869 335 Pfam Myb-like DNA-binding domain 38 86 IPR001005 -
Sto4g1869 335 MobiDBLite consensus disorder prediction 225 263 - -
Sto4g1869 335 MobiDBLite consensus disorder prediction 280 335 - -
Sto4g1869 335 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 32 92 IPR017930 -
Sto4g1869 335 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 35 86 IPR006447 GO:0003677
Sto4g1869 335 MobiDBLite consensus disorder prediction 234 255 - -
Sto4g1869 335 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 2 85 IPR044848 GO:0003700
Sto4g1869 335 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 84 279 IPR044848 GO:0003700
Sto4g1869 335 Gene3D - 34 92 - -
Sto4g1869 335 MobiDBLite consensus disorder prediction 284 299 - -
Sto4g1869 335 MobiDBLite consensus disorder prediction 1 28 - -
Sto4g1869 335 Pfam MYB-CC type transfactor, LHEQLE motif 79 111 IPR025756 -
Sto4g1869 335 PANTHER MYB FAMILY TRANSCRIPTION FACTOR APL 84 279 - -
Sto4g1869 335 PANTHER MYB FAMILY TRANSCRIPTION FACTOR APL 2 85 - -
Sto4g1869 335 MobiDBLite consensus disorder prediction 7 26 - -
Sto4g1869 335 SUPERFAMILY Homeodomain-like 34 86 IPR009057 -
Sto4g1869 335 MobiDBLite consensus disorder prediction 315 335 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto4g1869 Sto-Chr4 19401923 19404227 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto4g1869 6 332 G2-like Transcription Factor Family AT1G79430 39.312 1.83e-63 203
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Sto4g1869 Myb_DNA-binding 4e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto4g1869 - - gmx:100793303 259.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto4g1869 4 19401923 19404227 Sto4g1869 4 19401923 19404227 ECH