Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto4g1376 ATGTACAGAATTTTACCTCGTCTTCTTAGATTTGTCCATCATCCTGGATCTTTCACGTGTTCTCGGAGCACGCCGTCGCCGCCCTCTGTCATCGCCTCCGTCGTTCATATGCAGATTGTCGCTCGTTCCGCCACTCGTTTGCTAAGCAGATCTAGCGTCTCGCCGCCGTCTCCATCCATCTCTATTGCCATGGACGTTGGAGGAGCTCGCAAGAGGGGACGGCCTGATGCTGCCTTTAACGGCATTGGCGGCGTTAAGAAATTCAAGCCAGAAATGGAGTCCTTTACACCTGGTTTAGGAAGCAAATCAAAGCCATGCACAAAGTTTTTCAGCACCTCTGGCTGTCCATTTGGTGAGGGATGCCATTTCTTGCATTACGTTCCTGGTGGCGTCAAGGCAGTCTCTCAGATGATTAATGTTGGTAGCAACCCTACTCATCCACAACCTAGTAGAAACCCAACAGTACCATCATCCTTCCCTGATGGCTCTTCTCCTCCATCTGTTAAAACCCGACTATGCAACAGGTATAATTCAGCTGAAGGTTGTAAATTTGGTGCTAAGTGCCACTTTGCTCATGGAGAGTGGGAGCTTGGCAAGCCTGCAGCGCCATCGTATGAAGAACCTCATCATGCTGTGGGACAAATGCAAAGCAGGGTTGGCAGGCGGGTTGAGCCTCTGCCTCCTGCTCATGGAGCTGCTGCAAGCTTTGGGGCTTCTGCTACTGCCAAGATAAGTATTAATGCTTCCCTTGCTGGAGCTATCATTGGGAAAAATGGTTCCAACTCTAAGCAAATCTGTCGTGTGACTGGAGCTAAACTTGCTATCAGGGACCATGATTCGGATCCTAACCTGAAGAACATTGAGCTTGAGGGGAGCTTTGATCAGATCAAGCAAGCGAGTGCAATGGTTCATGAACTTATAGCAAATGTTGGCTCAGTCTCTAGACCTCCAACGAAAAACATTACAGCACATGGGCATGGACATGGGCATGGGCATGGGCATGGGCATGGGCATGGACATGCCCCAGGGACCAACTTGAAGACTAAGCTGTGTGAAAATTTTGCTAAGGGTTCCTGCACATTTGGAGACAGGTGCCACTTCGCACATGGCTCAGATGAGTTACGAAAGACTGTGATTTGA 1140 0.4939 MYRILPRLLRFVHHPGSFTCSRSTPSPPSVIASVVHMQIVARSATRLLSRSSVSPPSPSISIAMDVGGARKRGRPDAAFNGIGGVKKFKPEMESFTPGLGSKSKPCTKFFSTSGCPFGEGCHFLHYVPGGVKAVSQMINVGSNPTHPQPSRNPTVPSSFPDGSSPPSVKTRLCNRYNSAEGCKFGAKCHFAHGEWELGKPAAPSYEEPHHAVGQMQSRVGRRVEPLPPAHGAAASFGASATAKISINASLAGAIIGKNGSNSKQICRVTGAKLAIRDHDSDPNLKNIELEGSFDQIKQASAMVHELIANVGSVSRPPTKNITAHGHGHGHGHGHGHGHGHAPGTNLKTKLCENFAKGSCTFGDRCHFAHGSDELRKTVI 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto4g1376 379 Gene3D - 162 199 - -
Sto4g1376 379 Gene3D - 342 377 - -
Sto4g1376 379 CDD KH-I 243 304 - -
Sto4g1376 379 SUPERFAMILY CCCH zinc finger 166 198 IPR036855 GO:0046872
Sto4g1376 379 SUPERFAMILY CCCH zinc finger 345 376 IPR036855 GO:0046872
Sto4g1376 379 Pfam RNA-binding, Nab2-type zinc finger 105 125 - -
Sto4g1376 379 Pfam KH domain 242 304 IPR004088 GO:0003723
Sto4g1376 379 ProSiteProfiles Zinc finger C3H1-type profile. 100 128 IPR000571 GO:0046872
Sto4g1376 379 ProSiteProfiles Type-1 KH domain profile. 239 303 - -
Sto4g1376 379 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 14 74 377 - -
Sto4g1376 379 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 230 311 IPR036612 GO:0003723
Sto4g1376 379 SUPERFAMILY CCCH zinc finger 101 126 IPR036855 GO:0046872
Sto4g1376 379 ProSiteProfiles Zinc finger C3H1-type profile. 167 195 IPR000571 GO:0046872
Sto4g1376 379 SMART kh_6 238 308 IPR004087 GO:0003676
Sto4g1376 379 ProSiteProfiles Zinc finger C3H1-type profile. 345 372 IPR000571 GO:0046872
Sto4g1376 379 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 169 194 IPR000571 GO:0046872
Sto4g1376 379 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 347 370 IPR000571 GO:0046872
Sto4g1376 379 Gene3D K Homology domain, type 1 235 341 IPR036612 GO:0003723
Sto4g1376 379 SMART c3hfinal6 100 127 IPR000571 GO:0046872
Sto4g1376 379 SMART c3hfinal6 345 371 IPR000571 GO:0046872
Sto4g1376 379 SMART c3hfinal6 167 194 IPR000571 GO:0046872
Sto4g1376 379 MobiDBLite consensus disorder prediction 139 166 - -
Sto4g1376 379 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 74 377 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto4g1376 Sto-Chr4 10287446 10291498 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Sto4g1376 KH_1 3.7e-11 CL0007
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto4g1376 - - gmx:100818781 458.759