Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto4g0908 atgggaaaagGAAGAGCACCATGCTGTGATAAGAGCAAAGTGAAGAGAGGGCCATGGAGCCAAGAAGAAGACCTTAAGCTCATAGCTTTTATACACAAAAATGGCCATGAAAATTGGAGGGCTCTTCCTAAACTAGCAgGGCTTTTGCGATGCGGAAAAAGTTGTCGTCTGAGATGGATCAATTACTTGAGACCCGATGTGAAACGAGGCAATTTTACCCCAGAGGAAGAGGAAACCATTATAAAACTACATGAAGCCTTAGGAAACAAGTGGTCAAAAATTGCATCCTATTTGCCAGGAAGAACAGACAATGAGATCAAGAATGTGTGGAACACCCATTTGAAGAAAAGACTAAAGCCaaagtcatcatcatcattatcatcatcatcatcatctattgCTGATGAATCATCCATAAGTACTACTACTGCTCCTACTCTCTCCTCTGATTCATCATCTTCCTCAGAGAAACAAGTGTCCATTATTATTAATGAACCAATTGATCATGAAATGATCACCAAAGAGGATCAAAAGGAGTCCCCAattgcttcatcttcttctacTGATCATGATCACTCATCAAAGCCAGAACAAGAACAAATCATGGACCATTCTGCATTATTTGCCGACTATTTGGGACAAGATGACATTTGGAACATCCTAGACAACCCAGAAAGCTTCCAGTCAAATGATGTCAAAACCTCAAATgttggagaagaagatgaagaacaaAAGAAGAATTGGCTCCATGATTTGGAGAATGAGCTTGGATTAGGAGGAACAGAGGAGTTGAACCAGAATAATACTATTGAAGATCCAAACATGGTTGAATTGTTTGAATCATCATCATGGCCTTTTTGGTCTGAAATTTCTGGTCTTTGA 882 0.3571 MGKGRAPCCDKSKVKRGPWSQEEDLKLIAFIHKNGHENWRALPKLAGLLRCGKSCRLRWINYLRPDVKRGNFTPEEEETIIKLHEALGNKWSKIASYLPGRTDNEIKNVWNTHLKKRLKPKSSSSLSSSSSSIADESSISTTTAPTLSSDSSSSSEKQVSIIINEPIDHEMITKEDQKESPIASSSSTDHDHSSKPEQEQIMDHSALFADYLGQDDIWNILDNPESFQSNDVKTSNVGEEDEEQKKNWLHDLENELGLGGTEELNQNNTIEDPNMVELFESSSWPFWSEISGL 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto4g0908 293 Pfam Myb-like DNA-binding domain 16 63 IPR001005 -
Sto4g0908 293 Pfam Myb-like DNA-binding domain 69 114 IPR001005 -
Sto4g0908 293 Gene3D - 70 140 - -
Sto4g0908 293 SUPERFAMILY Homeodomain-like 14 110 IPR009057 -
Sto4g0908 293 SMART sant 15 65 IPR001005 -
Sto4g0908 293 SMART sant 68 116 IPR001005 -
Sto4g0908 293 CDD SANT 71 114 IPR001005 -
Sto4g0908 293 Gene3D - 15 68 - -
Sto4g0908 293 ProSiteProfiles Myb-like domain profile. 11 63 IPR001005 -
Sto4g0908 293 ProSiteProfiles Myb-like domain profile. 64 114 IPR001005 -
Sto4g0908 293 MobiDBLite consensus disorder prediction 120 199 - -
Sto4g0908 293 MobiDBLite consensus disorder prediction 121 161 - -
Sto4g0908 293 CDD SANT 18 63 IPR001005 -
Sto4g0908 293 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 63 IPR017930 -
Sto4g0908 293 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 247 - -
Sto4g0908 293 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 118 IPR017930 -
Sto4g0908 293 PANTHER TRANSCRIPTION FACTOR MYB72 1 247 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto4g0908 Sto-Chr4 7219915 7222572 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto4g0908 1 171 MYB Transcription Factor Family AT1G56160 62.222 1.93e-74 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Sto4g0908 Myb_DNA-binding 9.2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto4g0908 K09422 - gmx:100101836 252.677