Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto4g0899 TTGACTGGAAAGACCATCACTCTCGAGGTTGAGAGTAGTGACACCATTGATAATGTCAAGGCCAAGATTCAGGACAAGGAAGGTATCCCTCCTGATCAGCAGAGGTTGATTTTCGCTGGTAAGCAGCTGGAAGATGGTCGTACTCTTGCTGATTATAACATCCAAAAGGAATCAACGCTTCACTTGGTTTTAAGGCTTAGGGGAGGAACCATGATTAAAGTGAAGACTCTAACTGGAAAAGAGATTGAAATTGATATTGAGCCAACTGATACCATTGATCGGATCAAGGAACGAGttgaagagaaagaaggaatTCCTCCTGTGCAACAGAGGCTCATATATGCTGGTAAGCAACTTGCAGACGACAAAACAGCTAAAGAGTACAATATTGAGGGAGGTTCTGTGCTTCACTTGGTGCTTGCACTGAGGGGTGGTAGTCACTAA 444 0.4234 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKEYNIEGGSVLHLVLALRGGSH 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto4g0899 147 Gene3D - 1 70 - -
Sto4g0899 147 Gene3D - 71 147 - -
Sto4g0899 147 SUPERFAMILY Ubiquitin-like 1 69 IPR029071 -
Sto4g0899 147 ProSitePatterns Ubiquitin domain signature. 96 121 IPR019954 -
Sto4g0899 147 CDD Ubl_NEDD8 72 145 IPR038738 -
Sto4g0899 147 PANTHER - 1 145 - -
Sto4g0899 147 SMART ubq_7 1 65 IPR000626 GO:0005515
Sto4g0899 147 SMART ubq_7 70 141 IPR000626 GO:0005515
Sto4g0899 147 PANTHER UBIQUITIN 1 145 - -
Sto4g0899 147 SUPERFAMILY Ubiquitin-like 71 145 IPR029071 -
Sto4g0899 147 ProSiteProfiles Ubiquitin domain profile. 70 145 IPR000626 GO:0005515
Sto4g0899 147 ProSitePatterns Ubiquitin domain signature. 20 45 IPR019954 -
Sto4g0899 147 PRINTS Ubiquitin signature 46 67 IPR019956 -
Sto4g0899 147 PRINTS Ubiquitin signature 25 45 IPR019956 -
Sto4g0899 147 PRINTS Ubiquitin signature 4 24 IPR019956 -
Sto4g0899 147 ProSiteProfiles Ubiquitin domain profile. 1 69 IPR000626 GO:0005515
Sto4g0899 147 Pfam Ubiquitin family 1 67 IPR000626 GO:0005515
Sto4g0899 147 Pfam Ubiquitin family 72 143 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto4g0899 Sto-Chr4 7140872 7143347 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto4g0899 1 69 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 100.000 6.97e-45 141
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto4g0899 K12158 - gmx:100794152 276.559