Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto4g0755 ATGGTAGTACCAGAGGACATGAAGAAGCAACTTGCTCTTGCTGTGAGAAGCATCCAATGGAGCTATGCAATCTACTGGTCTGCTTCAGCTACCCAACCTGGTGTGTTAGGGTGGGGTGAAGGATATTACAATGGGGACATAAAGACAAGGAAAACAAGCCAAGGAGTAGAACTTAATGCTGACCAAATAGGTTTACAGAGGAGTGAGCAGCTTAGAGATCTATATGAGTCCCTTGCAACTGCAGAATCTAATCCACAAACTAAAAGGCCTTCAGTTTCACTATCTCCTGAAGATCTCACAGACTCTGAGTGGTATTACTTGGTTTGCATGTCCTTCATATTCAACATTGGCCAAGGGTTACCAGGAAGAACTCTTGCAAATGGTCAACCCATTTGGCTGTACAATGCTCACTGTGCTGATAGTAGAGTTTTTATACGCTCACTGCTCGCAAAGACAGTGGTGTGCTTTCCTTTTCTGGATGGTGTTCTTGAGCTCGGTACAACTGATCTGGTCTCGGAGGATCCGAGTCTCATTCAACGCATCAGAACTTCTTTCTTGGATATTTTAGATACCAAAGTTCGCGAGAAGAATGGAGTTGCCGGCGAAGAAGTTGGCGGTGCAGCATTTGATCATAACAACGGTTTTGATATGAAATTAACTCCAGAATTAGAATATGAAGTAGGCAATAATGTAACTTCTCCCAATAGTAGTTCAAATGCATTCCAAGCCAATCAATCAGTGGATGAGACAACATTCATGGTTCAAAGGATAAATGGTGGTGCTTCCCAAGTCCAAAGCTGGCAAGTGATGGAGGATGAATTGAGTAATTGTGTTCATAATTCCATGAATACTAGTGATTGCATATCCCAAACTCTTACTGCTCCTCCTGAACAGAATGCTGAACAGAATGCTCCTATTCAAGAGTGCAAAAACACAAAGATGACCTTGGTGGATGCTCAAAGTGGTGATGACTGGCATTACCAGAGAGTTCTTTCGGCTCTTCTCAAAAGCTCGGACCAGTTAATTATGGGAGCGCATTTTCAGAACTCCCATCGGGAAAAATCCGGCTTTGTCAGCTGGAAGAAAGAAGGATCAAAGGGTTGTCAATGGCCAAGAGGTGGATCCCAACAAAAAGTACTGAAGAAGGTATTGTTTGAAGTTCCTCGTATGCACATAGATTGGCTGCTTGAGCTTCAAGAGGAAAATGACTACAAAGAAATTGGCATGAACCATGTATTGTctgaaagaaggagaagaacaaAACTAAATGAAAAATTTTTAGCCCTTAGATCAATTGTCCCTTCAATTACTAAGGATGACAAAGTTTCAATACTGGATGAGGCAATAGAATACCTTAAAAAGCTCGAGACAAAGTTCAGAGGACAAGCTTCTGCCTCAACAAAAAAGATCAAACAAGCACTTCTCAAGGCAGCCTGGAACAACATCAACATTGCCATcaacaagaagaagagcaaTTTCCCCGCCGCGAGCTTCCGGGGGTTCGGATGCAGTGCCGGTGCGGCGTCGCAGCAGGTGTCGGTTCCGGCGGCGATTCGGACATCGGCCGATTGGCGAGGGACGAAAGCCAGGAAGAAGAAGCACGTGAGGAATGGTAATGGCAGCAAGAGCTGTGAAGGTCAAGGCGGCGGCGTTGTTGTTGATGGCGCTAATTCTTCTGGTTCGGCGAATCTTGTTGATTTTCAAGATGTTTGGTGTGGCCCCGGAATTGGGTTTTCGGCGGATATTGCTGCTCCGGTCGATTGCGTTACGGCAAGGAAGAATGTGTCTGTGAGAGGGAAGATTGATGCGGAGAAGATAACCCACAAAGAGCGTCGGCGAACAGTAAACCCTGAAAGCATCTCCTTTTTAAATAGTGATACTGATATCTTCACAAATCGGTCTGAGTCTCTTGCTACTGCTAGATACTATCGCCATGTTCCACATCCTTCTTCTGATGGTTTTTCTGAGATGATGCTGCTTCAAGGAAATCTGCTAATGGGGGGAAGATTAAATTCTCGCGATCACTTCAGAGAGATGAGACTTGATGTTGATAACATGTCATATGAGCAATTACTTGCTCTTAGTGAGAGAATTGGTTATGTGAACACTGGACTTAAAGAAGATGAAATACGTCGCCACACAAGGAAATGTAAGTTTCCAATGTTGATTAAAACATCGGAGCAAAATGTAGACAAGAATTGCAGCATTTGTCAGGAAGAATATGTAGCTGATGATGATCTGGGGAGGCTAAAATGTGAACACAGCTTTCACTTTCAGTGTTTAAAACAATGGCTTGCCCTGAAAAATAGCTGCCCTGTGTGTAAGCAAGAAGTAGTTATGCGTCATTCAGTGGCAAAATCCTCAAAATCctga 2373 0.4294 MVVPEDMKKQLALAVRSIQWSYAIYWSASATQPGVLGWGEGYYNGDIKTRKTSQGVELNADQIGLQRSEQLRDLYESLATAESNPQTKRPSVSLSPEDLTDSEWYYLVCMSFIFNIGQGLPGRTLANGQPIWLYNAHCADSRVFIRSLLAKTVVCFPFLDGVLELGTTDLVSEDPSLIQRIRTSFLDILDTKVREKNGVAGEEVGGAAFDHNNGFDMKLTPELEYEVGNNVTSPNSSSNAFQANQSVDETTFMVQRINGGASQVQSWQVMEDELSNCVHNSMNTSDCISQTLTAPPEQNAEQNAPIQECKNTKMTLVDAQSGDDWHYQRVLSALLKSSDQLIMGAHFQNSHREKSGFVSWKKEGSKGCQWPRGGSQQKVLKKVLFEVPRMHIDWLLELQEENDYKEIGMNHVLSERRRRTKLNEKFLALRSIVPSITKDDKVSILDEAIEYLKKLETKFRGQASASTKKIKQALLKAAWNNINIAINKKKSNFPAASFRGFGCSAGAASQQVSVPAAIRTSADWRGTKARKKKHVRNGNGSKSCEGQGGGVVVDGANSSGSANLVDFQDVWCGPGIGFSADIAAPVDCVTARKNVSVRGKIDAEKITHKERRRTVNPESISFLNSDTDIFTNRSESLATARYYRHVPHPSSDGFSEMMLLQGNLLMGGRLNSRDHFREMRLDVDNMSYEQLLALSERIGYVNTGLKEDEIRRHTRKCKFPMLIKTSEQNVDKNCSICQEEYVADDDLGRLKCEHSFHFQCLKQWLALKNSCPVCKQEVVMRHSVAKSSKS 790
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto4g0755 790 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 408 461 IPR036638 GO:0046983
Sto4g0755 790 MobiDBLite consensus disorder prediction 525 546 - -
Sto4g0755 790 Gene3D - 400 464 IPR036638 GO:0046983
Sto4g0755 790 SMART finulus 412 461 IPR011598 GO:0046983
Sto4g0755 790 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 406 455 IPR011598 GO:0046983
Sto4g0755 790 Pfam Helix-loop-helix DNA-binding domain 410 456 IPR011598 GO:0046983
Sto4g0755 790 Pfam Ring finger domain 733 775 IPR001841 -
Sto4g0755 790 PANTHER TRANSCRIPTION FACTOR TT8 6 467 - -
Sto4g0755 790 PANTHER TRANSCRIPTION FACTOR EGL1 6 467 - -
Sto4g0755 790 SUPERFAMILY RING/U-box 721 781 - -
Sto4g0755 790 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 7 185 IPR025610 -
Sto4g0755 790 ProSiteProfiles Zinc finger RING-type profile. 734 775 IPR001841 -
Sto4g0755 790 SMART ring_2 734 774 IPR001841 -
Sto4g0755 790 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 721 788 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto4g0755 Sto-Chr4 5196663 5214136 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto4g0755 2 460 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G41315 48.016 2.10e-141 429
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Sto4g0755 bHLH-MYC_N 8.4e-45 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto4g0755 - - gmx:100808167 593.193