Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto4g0725 ATGGGCATCAAGGATCTTCTCCGATTCATGAAGCCGTATACTGAACCCATTCACATCAAGAAATATGCCGGAAAACGCGTAGGTATTGATGCATATTCATGGCTTCACAAGGGAGCTTATTCCTGTAGTATGGAGCTTTGTCTCAATTCGGATACTGAAAAGAAATTTCGGTACATAGAGTACTTTATGCACCGAATCAAGCTGCTTCACCACTATAGGATAACGCCAGTGGTTGTTTTTGATGGTGGAAGCATTCCTTGCAAGGCAGGAACCGAGGAAGATAGGAAGAGAAAAAGAAGTGCTAATCGTGATTTGGCAATGGCTAAGCTCAAACAAGGGAATGTCAATGCAGCCTCAGAGCTATTCCAGAGAGCAGTAAGTGTTACTCCCCTTATGGCTCATCATCTGATTCAGGTTTTGAGATCAGAAAAAATTGAGTTTGTTGTAGCTCCATATGAAGCAGATGCTCAGTTAGCATACTTGTCCAACCTTGAAACAGAAAAGGGTGGAATAGTGGCAGTAATTACAGAGGATAGTGATCTAATGGCATATGGTTGTCCGGCTATTGTCTTTAAGATGGACCGTTATGGGAAAGGTGAAAGCATAGAACTAGAGAAGGTTTTTAAAGCTGAGAATTGCAAGCCTTCCTTCCGGAGTTTTGATATGGAACTCTTTGCGGGTATGTGTGTCTTAGCTGGCTGTGACTTTCTTCCATCTGTTCCTGGAATTGGTATAGCGCGAGCTCATGCCTTAGTTTCCAAGTATCGGAACCTAGATCGTGTGTTATCTGTTCTTAAGTTAGAGAAGGGCAATCAAATGCCCGAAGATTATGCCAAATCCTTCAAAGAGGCAATTGCAGTCTTTCAGCATGCTCGAATATATGATACCACTGGTAAGGAGCTCAAGCATATCTCGCCACTTCCGCAAAAACTTCTTCAGTCCCTtgatggaaaacttgattttttgggACCGAAAGCTCCCTTACAGTCTTTGGCTCCTACAATGCCAGAGAAAATAGCAGAGGCAACGACTATGCAGAATCTGGTCTCAAACAAAGACAAGTATTCTGGTGAAGCATTGGCACTTCAGAAACTTATCATGCCTTTGGCAACTTGTGGAGCCGTAGGAAAGGAAAATATTCCTGATGAAACTCCATTAAAGGTTCCTGACAACAATCCATTCAGGATAAGAAGACCTGAGGAGATTTCTTTTATCAGCAGTTTGGAATATATGGATGTGTGCACCTCTCCAGATAGCTTTCAAGAAGAGAGGCCGGAAAATCTCTCGAGGAAAAGGAAATTTCAAACCATTTGCTCAGATCAAGTAGAAACTTGTGAGGACCAAGTTTCAGCAGTGACGGTTGTTGAAGTAGAAGATCCAGATATTTTGTGTTGGACAGTGGAGTCCCAAGAAAGTGTAAATTCCAAGATTACTAAAGGCAGTAATTTGAAAAGAGGTACAAATGAAAAGAAATCCAAGGGAAGCAATTGCAAGAAATCAGGGAGTGAAGTTGTTGGGATGTGCCAGCTATTACGTTGGCAAGGCAAAAAGCAGAAGAGGTTGATTTGTATCACTGAAATGAACAGGATGGCCTCTTTCTTTGGTGAGAAAGCTAGTGTTCAGTTTAGTAAGAAGCCTAAGATGTATTGCTTGGTCATGGATAAGCATCTAGTGCGAGCAATAGTAAGGAAGCAAGTGGAGTCTATTTCCACAAGGATGAGGGGCGAGTGGGAGGCTATTCCAATAAGGCCTCCCAAAGAAGGATGA 1767 0.4188 MGIKDLLRFMKPYTEPIHIKKYAGKRVGIDAYSWLHKGAYSCSMELCLNSDTEKKFRYIEYFMHRIKLLHHYRITPVVVFDGGSIPCKAGTEEDRKRKRSANRDLAMAKLKQGNVNAASELFQRAVSVTPLMAHHLIQVLRSEKIEFVVAPYEADAQLAYLSNLETEKGGIVAVITEDSDLMAYGCPAIVFKMDRYGKGESIELEKVFKAENCKPSFRSFDMELFAGMCVLAGCDFLPSVPGIGIARAHALVSKYRNLDRVLSVLKLEKGNQMPEDYAKSFKEAIAVFQHARIYDTTGKELKHISPLPQKLLQSLDGKLDFLGPKAPLQSLAPTMPEKIAEATTMQNLVSNKDKYSGEALALQKLIMPLATCGAVGKENIPDETPLKVPDNNPFRIRRPEEISFISSLEYMDVCTSPDSFQEERPENLSRKRKFQTICSDQVETCEDQVSAVTVVEVEDPDILCWTVESQESVNSKITKGSNLKRGTNEKKSKGSNCKKSGSEVVGMCQLLRWQGKKQKRLICITEMNRMASFFGEKASVQFSKKPKMYCLVMDKHLVRAIVRKQVESISTRMRGEWEAIPIRPPKEG 588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto4g0725 588 MobiDBLite consensus disorder prediction 483 497 - -
Sto4g0725 588 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 24 38 IPR006084 -
Sto4g0725 588 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 76 95 IPR006084 -
Sto4g0725 588 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 140 157 IPR006084 -
Sto4g0725 588 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 225 240 IPR006084 -
Sto4g0725 588 Gene3D - 1 214 - -
Sto4g0725 588 Gene3D - 218 291 - -
Sto4g0725 588 MobiDBLite consensus disorder prediction 478 500 - -
Sto4g0725 588 Pfam XPG N-terminal domain 1 100 IPR006085 GO:0004518
Sto4g0725 588 CDD PIN_EXO1 1 209 IPR044752 GO:0046872
Sto4g0725 588 Pfam XPG I-region 144 235 IPR006086 GO:0004518
Sto4g0725 588 ProSiteProfiles TPR repeat profile. 99 132 IPR019734 GO:0005515
Sto4g0725 588 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 1 346 IPR006084 -
Sto4g0725 588 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 341 501 IPR006084 -
Sto4g0725 588 SUPERFAMILY PIN domain-like 2 235 IPR029060 -
Sto4g0725 588 CDD H3TH_FEN1-like 223 295 - -
Sto4g0725 588 PANTHER 5'-3' EXONUCLEASE FAMILY PROTEIN 1 346 - -
Sto4g0725 588 PANTHER 5'-3' EXONUCLEASE FAMILY PROTEIN 341 501 - -
Sto4g0725 588 SMART xpgn3 1 102 IPR006085 GO:0004518
Sto4g0725 588 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 220 325 IPR036279 -
Sto4g0725 588 SMART xpgineu 141 213 IPR006086 GO:0004518
Sto4g0725 588 SMART HhH_4 222 255 IPR008918 GO:0003677|GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto4g0725 Sto-Chr4 4899659 4904500 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto4g0725 1 315 Core DNA Replication Machinery Family AT5G26680 27.052 6.17e-16 78.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto4g0725 K10746 - cit:102616157 590.882