Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto4g0622 ATGTATGAATCTCCGATCCTGTCTAGTGGGAGAAATCGGAAAATAATAATGGAGGACAACATTGGAGGTGGTTCATCTTCTTCTAAGTGGGTTATGAGTGACCAGCAAGATCGTTTATTGCCAATAGCGAATGTTGGTCGGATCATGAAGCAGATTCTGCCTCGGAATGCTAAGATCTCGAAGGAAGCAAAGGAAACGATGCAAGAATGTGTGTCGGAGTTCATAAGCTTCGTGACGGGCGAAGCCTCGGACAAGTGCaggaaggagaggaggaagactGTGAATGGCGATGACATATGCTGGGCATTGGGAGCACTTGGTTTTGATGATTATGCCGACCCACTCACCAGATCACGATTTGAGAAGTTTCTTTTACTTACCCGCATCTTACCCATGGGTGATCATCATTATAATGCTCAAGCGATTAGGCCTATGCCTGATCCTAACGCTTTGTATTACTATTCCAATTCCCCCACGCGATCATTATTGTTGACCAATGCCTATTCTTCCTTAAGTGCATTGAGGTCACAGCTAGAGACATATGGGGACGTGAGAGCCCTCTACACGGACGTGATACCCTACGGGAGGGTCATCGTCCATTTTTTTGACATCAAAAGTGCCGAGATAGCTTTCTGTACTATCCTCCATAGTTACTTCTATCAACTTCAAAGGTACTACTATCTCACGCGCCACCATAATCCTCCCTTGTGCGCCTTCTACATAATCCTCAACCCTCACGCGCCGCCACTATGGCGACCGCCCTTTCCCCAATACCATAACCAAGGCACCCTCGTCGTCTTCAATTTGGACTCCCACGTCTCCAATCACACTCTCCACCAATCTTTCCTACCTTACGggcgtATAAGAGAAGTTCGCGGTTCGCCGGCGAAAAGCAATGTGAAGTTTGTGGAGTTTTTCGACGTGAGAGATGCAAGTAAGGCTTTGGAAGGGATGAATGGGAAGCAAATTAGGaatgatattaataataataaaaatgttgtAATTCAGTTCAGTAGGCCGGGAAGATGGGGTTATACTACAAGTACAATCaataattcttattattattattatgatgtgaatttccataataataataataataataataataataataataataataataattgttattACAATTATGTCCCTCgccctcttctttctcttccgcCACCACCTGCCAATAATCTGAATCAAGCAAGCAAAGGTGAAGATTACTCGCAGTATGAAATCAAGGAAGGTGACGGTGGTAATTATGTGGATTCAAGAACCACTCTCATGATCAAGAACATAGCAAACAAATAcagTCAGAATGACATTTTGAATTTACTGGACAAACACTGCATTAAGTGCAACGAAGAGATTGGTGAGGGCAACGATCAACCCTTGTCCTCTTACGACTTCCTATACCTTCCCATTGATTTCGgCAATGAGTGCAATATGGGATATGGGTTTGTGAACATGACTTCTCCACAAGCTGTACTCAGACTTCACAAGGCCTTGCATGATAAATGTTGTTGGGGTTTTGGTTCAAGAAAAATTTGCCAAATTACCTATGCCAAATATCAGGGAATGGAAGCACTGAAGGAGAAGTTGAAGGAGTCGAAGTTAATAATAGGGATGgagaagaaaatagaatacacACCAATAATGTTTAATCCAGCTCGAGATGGAAAGCAAATGACAAAGCCAGAATCACTCTGGATAACTCCCGAATCTGATGATTAG 1734 0.3956 MYESPILSSGRNRKIIMEDNIGGGSSSSKWVMSDQQDRLLPIANVGRIMKQILPRNAKISKEAKETMQECVSEFISFVTGEASDKCRKERRKTVNGDDICWALGALGFDDYADPLTRSRFEKFLLLTRILPMGDHHYNAQAIRPMPDPNALYYYSNSPTRSLLLTNAYSSLSALRSQLETYGDVRALYTDVIPYGRVIVHFFDIKSAEIAFCTILHSYFYQLQRYYYLTRHHNPPLCAFYIILNPHAPPLWRPPFPQYHNQGTLVVFNLDSHVSNHTLHQSFLPYGRIREVRGSPAKSNVKFVEFFDVRDASKALEGMNGKQIRNDINNNKNVVIQFSRPGRWGYTTSTINNSYYYYYDVNFHNNNNNNNNNNNNNNNCYYNYVPRPLLSLPPPPANNLNQASKGEDYSQYEIKEGDGGNYVDSRTTLMIKNIANKYSQNDILNLLDKHCIKCNEEIGEGNDQPLSSYDFLYLPIDFGNECNMGYGFVNMTSPQAVLRLHKALHDKCCWGFGSRKICQITYAKYQGMEALKEKLKESKLIIGMEKKIEYTPIMFNPARDGKQMTKPESLWITPESDD 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto4g0622 577 PANTHER TERMINAL EAR1-LIKE 1 397 568 - -
Sto4g0622 577 PANTHER TERMINAL EAR1-LIKE 1 143 385 - -
Sto4g0622 577 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 264 325 IPR000504 GO:0003723
Sto4g0622 577 ProSitePatterns NF-YB/HAP3 subunit signature. 70 86 IPR003956 GO:0005634|GO:0006355|GO:0043565
Sto4g0622 577 PANTHER RNA BINDING PROTEIN 397 568 - -
Sto4g0622 577 PANTHER RNA BINDING PROTEIN 143 385 - -
Sto4g0622 577 SMART rrm1_1 263 336 IPR000504 GO:0003723
Sto4g0622 577 Pfam RNA recognition motif 2 425 534 IPR007201 -
Sto4g0622 577 SUPERFAMILY RNA-binding domain, RBD 263 510 IPR035979 GO:0003676
Sto4g0622 577 Gene3D - 254 339 IPR012677 -
Sto4g0622 577 PRINTS CCAAT-binding transcription factor subunit A signature 67 85 - -
Sto4g0622 577 PRINTS CCAAT-binding transcription factor subunit A signature 86 104 - -
Sto4g0622 577 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 262 340 IPR000504 GO:0003723
Sto4g0622 577 Gene3D Histone, subunit A 30 124 IPR009072 GO:0046982
Sto4g0622 577 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 39 103 IPR003958 -
Sto4g0622 577 SUPERFAMILY Histone-fold 36 117 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto4g0622 Sto-Chr4 4010117 4017221 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto4g0622 15 130 CCAAT-HAP3 Transcription Factor Family AT2G47810 65.517 1.43e-45 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Sto4g0622 RRM_2 2.5e-25 CL0221
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto4g0622 - - gmx:100802212 283.493