Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto4g0617 ATGGCTCTAACCTCGTACTTCAACTGGGAAACTTGTCTTCAACCTGATCTCATCAACCTCAACCTCCAACATCAAACAAGTATCTTCAATGAAGCAACACCAGAAGAAGAACTACTCCTTCTCCCACCAGATTATTATAACCCTCTCCTTCCtcctaattataataattattattcagaTGAAAATTATAGTAGTACTACTGATTTTCTGTACCCTCTCCATGAAGATTATCACTATGAACATCATAATAATTTGTACAATTATTATAATGAGGATgacctccttcttcttccatgCCCAAAACGCCAAAAGTACTATGATGAGAGTACTATTAATGTTGTGCCGAATATTATTCCAGAGTTTAATCATGGAGGGTGTGGTGGGTGTTGTGgtgggaggaagaagaagaatagtagtagtagtagtaataaTGGGAATGTGGGGCCGCCGGGCGTGTCGGCGCAGAGCAAGGCGGCCCGGGAGAGGCGGAGGAAGATCACGGAGAAGACACAAGAGCTGGGGAAGCTGGTTCCTGCTGCTTCTAATTTGAATACTGCTGATATGCTTCAAGCTGCGGCTAAGTATCTTGCTTACTTGAAAGCTCAAGTTGGTATGCTTCAACTTGTTAACACAATGCAGGACGAAAAGGCATTATTGAGTGGAAGTGAAGATTTGAAGGCCATGCTTGTATCTCCATGTGTAGAAGAGAAGTTGTGCTTGAAGGAGAAGTGCTTGGTTCCAAAGGAGTTTGTGACCACTTTGAAGAATCTTCAAGAAGTCAAATCAAAACCTTCAATTCTCAATGATCTTAATCAGCTAATTCAGACAGAATCTGAGGAGAAAAAGATAGAAATCATATAA 861 0.3751 MALTSYFNWETCLQPDLINLNLQHQTSIFNEATPEEELLLLPPDYYNPLLPPNYNNYYSDENYSSTTDFLYPLHEDYHYEHHNNLYNYYNEDDLLLLPCPKRQKYYDESTINVVPNIIPEFNHGGCGGCCGGRKKKNSSSSSNNGNVGPPGVSAQSKAARERRRKITEKTQELGKLVPAASNLNTADMLQAAAKYLAYLKAQVGMLQLVNTMQDEKALLSGSEDLKAMLVSPCVEEKLCLKEKCLVPKEFVTTLKNLQEVKSKPSILNDLNQLIQTESEEKKIEII 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto4g0617 286 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 154 214 IPR036638 GO:0046983
Sto4g0617 286 MobiDBLite consensus disorder prediction 134 151 - -
Sto4g0617 286 SMART finulus 156 205 IPR011598 GO:0046983
Sto4g0617 286 Gene3D - 153 216 IPR036638 GO:0046983
Sto4g0617 286 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 150 199 IPR011598 GO:0046983
Sto4g0617 286 Pfam Helix-loop-helix DNA-binding domain 155 199 IPR011598 GO:0046983
Sto4g0617 286 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 1 271 - -
Sto4g0617 286 MobiDBLite consensus disorder prediction 133 165 - -
Sto4g0617 286 PANTHER TRANSCRIPTION FACTOR BHLH52-RELATED 1 271 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto4g0617 Sto-Chr4 3976661 3977598 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto4g0617 142 276 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G30670 45.588 1.69e-25 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Sto4g0617 HLH 2.7e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto4g0617 - - aip:107610272 158.303