Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto4g0604 ATGCTGGAAGACGAGGGTAAGGGCGGCGGCGTCGGCGGCGGCGGTCGGAGAACTTATTCACGTTCTGTTTCTTGGACTGATCGGTCTCCGACGAAGATTGTCCCCAATAAGAAGCCACCCACGAATAGTAAGCCTCGTCCTCTCTTGCCTCCTCTTCAGCCTCTATCTATCAACAAGCGAAGTGTGGAGGAATGGCCTAGTGCTGGATCTGATGATCTTGGGATTTGGCCTCTTCCACAAACCCCAAGAGGGTCCATAAAAGCCTTGGAGGTTTCCGATTCAGGGAAGCCTCTGAAGGAATTTCAGTTCAAGAGGGATAAATTAGCTTTCTTTGATAAGGAGTGTTCAAGAATTGCAGAACATGTGTATTTAGGGAGTGACACAGTGGCCAAGAATCACGACCTTTTGAGGCAAAATGGGATCACGCATGTGCTTAACTGTGTTGGATTTGTGTGTCCTGAGTATTTCAAGAGTGATTTTGTGTATAAGACACTGTGGTTGCAGGACAGCCCCACTGAGGACATCACAAGTATTCTCTATGATGTGTTTGATTACTTTGAGGATGTTCGGGAGCAAGGTGGGCGTGTGCTTGTCCATTGTTGTCAAGGGGTTTCAAGATCAACATCTTTGGTTATTGCTTACCTCATGTGGAGGGAAGGTCAGAGCTTTGAGGATGCGTTTCAGTATGTGAAGACAGCAAGAGGAGTCACCAATCCTAACATGGGTTTTGCTTGTCAGCTCCTGCAGTGTCAGAAACGTGTACACGCTATGCCGGCGAGTCCGAATTCGGTTCGTAGGATGTATAGGATGGCTCCTCATTCGCCCTATGATCCTCTCCACCTTGTGCCGAAAATGATAAACCATCCTGGTTCGGGAGCTCTTGATTCTCGTGGGGCGTTTATTATACATGTTCCTAATGCTATTTATGTGTGGATTGGGAAATTTTGTAGTTCTATGATGTCTTCTAATGCTAGAGCTGCGGCTTGTCAGGTGATACGTTACGAGAGGGCGAAAGGTCCGATTCTGAGCATCAATGAAGGGGAAGAGCCTCCAAAGTTTTGGATTGCTCTTGCTAATGAAAGCATGGAGGTTAGTGATGTGGGGATTGATGGTGGGAAGAAAGTTAGTGAGTATGATTTGGATTTTGAGATTTTCCATAAGGCTCTTGCTGGTGGAGTTGTTCCTCCTTTCACAGTTTCTAATGCAGGATCAGAAACTTGTCTTCCTGCAAGAGAAAATGGTTGGGGAAGATTGAGGAGGAAATTTGCTAGTGGGATCATGAAGGGGTTGTTCACATCATCATGCTCTAAACCTATGATTatggaagaagaaaatcaagattctgATTCTGTGATTGATCCTCCCTGTGGTTCACCAGATTCTTTTGAGTGTTTTCCAGATAACATCTCAGAAAGAGGAAAGGATACTACTAttgattcatcatcatcatcacttccGACTTCTCCAGCTGCTACATCAGattcttctttctcttgttTCCTAAGCAACAGTCCAAAATTCAGTTCAAAATCTCCAACACTCTCGCCCTCCAGTTCTGATTATGCAAGTTCCTTCACATTCTCACCTTCTTCTACAAATTGGTCTGACTTGTCATTTGTATCTTCTAGACAGCCATCACCTTCTAGCCTAGAACAAACTGATCCTTTTTATGTCAAAGAAGCTGTTTCTTCACCtaaggaggaagaggaggaggaggcatTTTCTGGTAGTGAAAATATGTATATGCCATTAAAAGGGTCTTTCCTCCCCTCCATTGCAGCGCGAAGAGGGAGTAATCCTCCGCCTCGAATGGTGCTACCTTCTGTCAACGAATCATCTCATCATCATGATCATCACACCAAGCTTCTGGTAAGATCACACTCATTCTCTTTACCTGACTTAGATGATGATATTGTGATGAAGGAGGATGCTAGTTTCAAGCAATTATCTGATCATGGAAATAATGAAAAAGAGGTATTACCAGATGATGCTGACATTAGTTCAAGTGGGGAATGGCATAGACCCAGCGCACTGCATCTTAAAGCTCTGTGGGACCAGGACCGCGTGCCTGAACTCTCGTCTTTCTTCCATCCAGTCTCCATAGACAGCTTAGCCTTCTTTGCTGTTAATGCCTCATTAATTTCATCCCACACGTTCACTTCTCCGTTTTCTGCAAAGGGAAGCCATAAATGA 2193 0.43 MLEDEGKGGGVGGGGRRTYSRSVSWTDRSPTKIVPNKKPPTNSKPRPLLPPLQPLSINKRSVEEWPSAGSDDLGIWPLPQTPRGSIKALEVSDSGKPLKEFQFKRDKLAFFDKECSRIAEHVYLGSDTVAKNHDLLRQNGITHVLNCVGFVCPEYFKSDFVYKTLWLQDSPTEDITSILYDVFDYFEDVREQGGRVLVHCCQGVSRSTSLVIAYLMWREGQSFEDAFQYVKTARGVTNPNMGFACQLLQCQKRVHAMPASPNSVRRMYRMAPHSPYDPLHLVPKMINHPGSGALDSRGAFIIHVPNAIYVWIGKFCSSMMSSNARAAACQVIRYERAKGPILSINEGEEPPKFWIALANESMEVSDVGIDGGKKVSEYDLDFEIFHKALAGGVVPPFTVSNAGSETCLPARENGWGRLRRKFASGIMKGLFTSSCSKPMIMEEENQDSDSVIDPPCGSPDSFECFPDNISERGKDTTIDSSSSSLPTSPAATSDSSFSCFLSNSPKFSSKSPTLSPSSSDYASSFTFSPSSTNWSDLSFVSSRQPSPSSLEQTDPFYVKEAVSSPKEEEEEEAFSGSENMYMPLKGSFLPSIAARRGSNPPPRMVLPSVNESSHHHDHHTKLLVRSHSFSLPDLDDDIVMKEDASFKQLSDHGNNEKEVLPDDADISSSGEWHRPSALHLKALWDQDRVPELSSFFHPVSIDSLAFFAVNASLISSHTFTSPFSAKGSHK 730
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto4g0604 730 MobiDBLite consensus disorder prediction 475 494 - -
Sto4g0604 730 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 173 234 IPR000387 GO:0016311|GO:0016791
Sto4g0604 730 MobiDBLite consensus disorder prediction 467 494 - -
Sto4g0604 730 MobiDBLite consensus disorder prediction 649 668 - -
Sto4g0604 730 PANTHER PROTEIN-TYROSINE-PHOSPHATASE MKP1 10 625 - -
Sto4g0604 730 Gene3D Severin 268 363 IPR029006 -
Sto4g0604 730 Pfam Dual specificity phosphatase, catalytic domain 122 252 IPR000340 GO:0008138|GO:0016311
Sto4g0604 730 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 105 256 IPR029021 -
Sto4g0604 730 SMART dsp_5 114 253 IPR020422 GO:0006470|GO:0008138
Sto4g0604 730 Gene3D Protein tyrosine phosphatase superfamily 93 256 IPR029021 -
Sto4g0604 730 CDD DSP 115 249 - -
Sto4g0604 730 ProSiteProfiles Dual specificity protein phosphatase domain profile. 114 256 IPR020422 GO:0006470|GO:0008138
Sto4g0604 730 MobiDBLite consensus disorder prediction 19 38 - -
Sto4g0604 730 SUPERFAMILY Actin depolymerizing proteins 260 358 - -
Sto4g0604 730 Pfam Gelsolin repeat 292 354 IPR007123 -
Sto4g0604 730 PANTHER MKPA PROTEIN 10 625 - -
Sto4g0604 730 MobiDBLite consensus disorder prediction 1 53 - -
Sto4g0604 730 ProSitePatterns Tyrosine specific protein phosphatases active site. 198 208 IPR016130 GO:0016311|GO:0016791
Sto4g0604 730 SMART VILL_6 266 360 IPR007122 GO:0051015
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto4g0604 Sto-Chr4 3858131 3861498 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto4g0604 42 150 Protein tyrosine phosphatase (PTP) family AT3G55270 52.586 2.84e-31 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto4g0604 - - lja:Lj6g3v0574850.1 808.905