Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto4g0587 ATGAAGAGACTAGGCAGCTCTGATTCTTTGGGCGCTCTCATCACCATCTCTCCATCCACAGAGGAACACAGTCCGCGGAGCAATACGAACCGCGTGTATGGTCAGGATCACGATCAGCTGCAGTCGATGATGTTGGAGGGAGTGGTGCTGGACGACGAAGGGTGCGTGGAGGAGCTGGGCCACCATCATCATTTGGAGAAGAAACGCCGCCTGAGCGTGGATCAAGTCAAGGCGTTGGAGAAGAACTTCGAAGTGGAGAACAAGCTCGAACCCGAGCGGAAGGTCAAGCTCGCTCAGGAGCTCGGGTTGCAGCCTCGTCAAGTCGCCGTGTGGTTCCAGAATCGCCGAGCGCGATGGAAGACCAAGCAGCTGGAAAGAGACTACGGCGTACTCAAAGCCAATTACGACGCGCTCAAACTCAACTTCGACGCCCTCCAGAAAGACAACCAAGCCTTGCTCAAAGAGATTAAGGAGTTGAAATCGAGATTACAGGAGGAgaagattgaagaagaagaagaagacggatCGGAGAAGGAGGCCGCGGGGTGTGAGGAGAAAGTGATACAGATACATACACTACTCGGTGAAGAGTCGCCGCCGCCGCATCCGGCGGCGTTGGCGGCGGAGGAGGAGTTGAATAATTACGAGTGCTTTAACGGAAACGACGTCGTGGGAGGAGGGGGCACGCTTTTCTCGTGCGATCAGTTTAACAAAGACGGTGGTGCCTCTGACGATAATAGCGACACGAGCGCGATTCTGAACGAAGGGAACAGTCCAAACAATGCCTCCTCGTGCTTTCAGTTCCAGAAAACGACGTCGTACCAGACTCCTCCTCACTACGTGAAAATGGAAGAGCATAACTTCTTCAGTGCGGACGAGGCCTGCAATTTCTTCTCGGACGATCAGGCTCCGACGCTCCAGTGGTATTGGAGCTAA 936 0.5278 MKRLGSSDSLGALITISPSTEEHSPRSNTNRVYGQDHDQLQSMMLEGVVLDDEGCVEELGHHHHLEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKANYDALKLNFDALQKDNQALLKEIKELKSRLQEEKIEEEEEDGSEKEAAGCEEKVIQIHTLLGEESPPPHPAALAAEEELNNYECFNGNDVVGGGGTLFSCDQFNKDGGASDDNSDTSAILNEGNSPNNASSCFQFQKTTSYQTPPHYVKMEEHNFFSADEACNFFSDDQAPTLQWYWS 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto4g0587 311 ProSitePatterns 'Homeobox' domain signature. 97 120 IPR017970 GO:0000981|GO:0006355
Sto4g0587 311 PRINTS Lambda-repressor HTH signature 93 102 IPR000047 GO:0003677
Sto4g0587 311 PRINTS Lambda-repressor HTH signature 102 118 IPR000047 GO:0003677
Sto4g0587 311 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 264 305 IPR045224 GO:0003700
Sto4g0587 311 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 1 263 IPR045224 GO:0003700
Sto4g0587 311 MobiDBLite consensus disorder prediction 10 32 - -
Sto4g0587 311 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-6-LIKE 1 263 - -
Sto4g0587 311 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-6-LIKE 264 305 - -
Sto4g0587 311 CDD homeodomain 67 123 IPR001356 GO:0003677
Sto4g0587 311 SMART HOX_1 65 126 IPR001356 GO:0003677
Sto4g0587 311 Pfam Homeobox associated leucine zipper 122 164 IPR003106 GO:0006355|GO:0043565
Sto4g0587 311 SUPERFAMILY Homeodomain-like 58 124 IPR009057 -
Sto4g0587 311 Coils Coil 121 176 - -
Sto4g0587 311 Pfam Homeodomain 67 120 IPR001356 GO:0003677
Sto4g0587 311 Gene3D - 60 129 - -
Sto4g0587 311 MobiDBLite consensus disorder prediction 1 32 - -
Sto4g0587 311 ProSiteProfiles 'Homeobox' domain profile. 62 122 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto4g0587 Sto-Chr4 3692012 3693115 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto4g0587 1 309 Homeobox Transcription Factor Family AT4G40060 45.706 2.34e-75 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Sto4g0587 Homeodomain 3.6e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto4g0587 K09338 - gmx:100796213 326.635
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto4g0587 4 3692012 3693115 Sto4g0587 4 3692012 3693115 ECH
Sto3g3003 3 34792103 34792997 Sto4g0587 4 3692012 3693115 ECH