Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto4g0378 ATGAATTCTTCTTCCACACAGTTTGTTTCTACGAGAAGGATGGGTGTATATGATCCTATCCACCAGATTAGTATGTGGGAAGAAAACTTCAAgagtaattgtaatttaagtgCTTCTGTGCCTTTAATTGGTGAGGCAGATGCGAAGTCAGACAACCAGTCAGAGGATGTTTCTCATGGAATGCTCGGAATTCCTAAGAGTTATGACCAAGAAGCTAATAAACCTTTTGAAAAGATACAAAGACGTCTTGCACAAAATCGAGAGGCTGCTCGTAAGAGTCGTCTGCGGAAAAAGGCCTATGTTCAGCAATTAGAATCAAGTCGTATGAAGCTGATCAAGTTAGAGCAAGAGCTTGACCGTGCAAGGCAGCAGGGATCTTTTATCGGTTGTGGGTTGGATTCTGATAATATGGCATTTGCTGGATCTGTAAATTCagGCATTACAACCTTTGAGATGGAATATGGGCTCTGGGTAGAAAAGcaaaataaacaaatttgtgAGCTGAGAACTGCTTTAAATGCTCATATTAGTGACACAGAGCTCAGGATACTTGTAGATGGTATAATGAAACACTATTCTGAACTCTTCCGCATGAAATCTGCAGTTGCGAAAGTGGATGTTTTCTATGTTTTGTTTGGAATGTGGAAAACAACAGCCGAACGATTTTTCTTATGGATTGGAGGATTCCGTCCATCTGGGCTTCTGAAGGTTCTTGTCCCTTTGATTGAACCCTTGACAGAGCAACAACGATTGGATGTTTATAACCTTGGACAATCATGCCAGCAAGCAGAAGATGCCCTTTCACAAGGTAGGGACAAACTTCAGCAAATACTTGCTGAAACTGTTGCAGGCGGACAAATGGTTGATGGAACCTTTATTCCACAGATGGCTACTGCAGTAGAGAAGTTTGAAGCTCTGGTGAGCTTTGTGAACCAGCAAAATTTAACCAAGCTTTATGTGAAACAGGCTGACCATCTTCGGCAGGAAACCTTGCAGCAAATGTTTCGAATCCTTACAATCCGTCAGGCTGCTCGATGCCTACTTGCTTTAGGGGAATATTTTCAACGCTTGCGGGCTTTGAGCTCACTTTGGGCAAATCGTCCTCATGAACCTGCTTAG 1119 0.4138 MNSSSTQFVSTRRMGVYDPIHQISMWEENFKSNCNLSASVPLIGEADAKSDNQSEDVSHGMLGIPKSYDQEANKPFEKIQRRLAQNREAARKSRLRKKAYVQQLESSRMKLIKLEQELDRARQQGSFIGCGLDSDNMAFAGSVNSGITTFEMEYGLWVEKQNKQICELRTALNAHISDTELRILVDGIMKHYSELFRMKSAVAKVDVFYVLFGMWKTTAERFFLWIGGFRPSGLLKVLVPLIEPLTEQQRLDVYNLGQSCQQAEDALSQGRDKLQQILAETVAGGQMVDGTFIPQMATAVEKFEALVSFVNQQNLTKLYVKQADHLRQETLQQMFRILTIRQAARCLLALGEYFQRLRALSSLWANRPHEPA 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto4g0378 372 Coils Coil 260 280 - -
Sto4g0378 372 ProSiteProfiles DOG1 domain profile. 147 367 IPR025422 GO:0006351|GO:0043565
Sto4g0378 372 Coils Coil 97 124 - -
Sto4g0378 372 PANTHER TRANSCRIPTION FACTOR TGA9 1 371 - -
Sto4g0378 372 SMART brlzneu 74 145 IPR004827 GO:0003700|GO:0006355
Sto4g0378 372 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 76 118 IPR004827 GO:0003700|GO:0006355
Sto4g0378 372 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 81 96 IPR004827 GO:0003700|GO:0006355
Sto4g0378 372 SUPERFAMILY Leucine zipper domain 78 116 IPR046347 GO:0003700|GO:0006355
Sto4g0378 372 Pfam Seed dormancy control 164 239 IPR025422 GO:0006351|GO:0043565
Sto4g0378 372 Gene3D - 77 126 - -
Sto4g0378 372 Pfam bZIP transcription factor 78 113 IPR004827 GO:0003700|GO:0006355
Sto4g0378 372 PANTHER TRANSCRIPTION FACTOR TGA1 1 371 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto4g0378 Sto-Chr4 2940906 2944544 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto4g0378 1 372 Calmodulin-binding Proteins AT5G10030 65.508 1.00e-178 499
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Sto4g0378 DOG1 3.2e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto4g0378 K14431 - gmx:100793353 577.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto4g0378 4 2940906 2944544 Sto4g0378 4 2940906 2944544 ECH
Sto3g3098 3 35761731 35766058 Sto4g0378 4 2940906 2944544 ECH