Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto4g0367 ATGATGACGATGAGCCCAGTGGGAAGCCCAACCTCAGGAGAAAACATCTCAGACAGCTCAAAcattaacaacaacaacaacaactatTCCTCCAAATTAGAACAAGACAGGTTCCTCCCCATAGCCAACGTTAGCCGTATCATGAAGAGGGCACTCCCACCCAATGCCAAGATCTCAAAAGAGGCCAAAGAGACCGTCCAGGAATGCGTCTCCGAGTTCATCAGCTTCATCACCGGCGAAGCCTCCGACAAGTGTcagagagagaagaggaagaccATCAACGGCGACGATCTCCTCTGGGCCATGACAACCTTAGGATTCGAGAACTATGTCTCGCCACTCAAAATTTACCTCAATAATTACAGAGAAACAGAGGGAGAGCACACCAAAAGTAGTAGTACTATTGTACAAGAAGATCAACATATTCACTCTCCCAATAGGGACACTAATACTACTActactcatcatcatcatcatcttcatcatcatcgtgGGGCCCCAGAAATTGAGAATTTCGCCATTAATTCTGGGTTTTACAACAACTCCATCACCAATATTGTGACTCATAATGATGCTGCTGATGCAAACCTGCGTTACAGGGTTCAATGGTTGGCTCCAGCTTTGAGATCACGCAATTCCATTCTATGTTGTGAAGTAATTAAAGTTTGA 669 0.3976 MMTMSPVGSPTSGENISDSSNINNNNNNYSSKLEQDRFLPIANVSRIMKRALPPNAKISKEAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVSPLKIYLNNYRETEGEHTKSSSTIVQEDQHIHSPNRDTNTTTTHHHHHLHHHRGAPEIENFAINSGFYNNSITNIVTHNDAADANLRYRVQWLAPALRSRNSILCCEVIKV 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto4g0367 222 SUPERFAMILY Histone-fold 35 159 IPR009072 GO:0046982
Sto4g0367 222 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 38 102 IPR003958 -
Sto4g0367 222 MobiDBLite consensus disorder prediction 128 165 - -
Sto4g0367 222 ProSitePatterns NF-YB/HAP3 subunit signature. 69 85 IPR003956 GO:0005634|GO:0006355|GO:0043565
Sto4g0367 222 Gene3D Histone, subunit A 25 161 IPR009072 GO:0046982
Sto4g0367 222 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-11 17 177 - -
Sto4g0367 222 PRINTS CCAAT-binding transcription factor subunit A signature 66 84 - -
Sto4g0367 222 PRINTS CCAAT-binding transcription factor subunit A signature 85 103 - -
Sto4g0367 222 PRINTS CCAAT-binding transcription factor subunit A signature 104 122 - -
Sto4g0367 222 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 17 177 IPR027113 GO:0001228|GO:0006355|GO:0016602
Sto4g0367 222 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto4g0367 Sto-Chr4 2855963 2857064 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto4g0367 17 133 CCAAT-HAP3 Transcription Factor Family AT4G14540 76.068 2.49e-63 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Sto4g0367 CBFD_NFYB_HMF 1e-26 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto4g0367 K08065 - gmx:100810059 210.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto4g0367 4 2855963 2857064 Sto4g0367 4 2855963 2857064 ECH