Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto4g0342 ATGGGTTGCGTCAACGGCAAGCAATCTCCGTCTCGCATCGACGGCTTGAAGAAACGCAGTGGCTATGTTGAGAGAGTTAGTGCATCCAAGCCAATCAACCACAGCTTCAGTAATCAGAGGCCGCAATATTCTGATAACAAGACAAATATGAACTCAGATCAGATCAAAGCACATGGGATTTCAACTTCAAGTTCAAGAAATGAGAGTGGCGGTGTGAGAGTACAAGCACAAGTAcaaggagaaagaaaaagagcgAATATTGGTAGAGAAGATaagaataacaataataatgatGTTGGGAATGTTTCTAACAGAGCTGTGGACAAGATGATTGGAAGAGATGAATATGTGGACGGGTGGCCTAAGTGGCTCGTTGATAATATACCTCCACAAGTTTTGGCTACCCTTGTTCCCAAGAGTGCTGATTCTTACGAAAAGCTGGCAAAGATAGGACGAGGAACATATAGCAATGTGTACAAAGCCAGAGATAAGGACACAGGAAAGATAGTTGCCATGAAGAAGGTTCGTTTTGACACATCGGATTCAGAAAGTATAAAGTTTATGGCAAGAGAGATCATGATTCTTCAGAAGCTGAATCACCCCAATGTCATCAAGCTTGAGGGCCTAGCCACCTCAAGGATGCAGTACAGTCTTTACCTGGTCTTTGAATACATGCAGTCAGACCTAACCCGAATCATCACCCGCCCCAGCGAGAAACTCACTGAACCAcagATCAAGCGGTATATGCAGCAACTGCTTTCTGGTCTGCAGCACTGCCATAAGAGAGGAGTGATGCACAGAGACATTAAAGCTTCAAACTTGTTAGTAGACAAAAAAGGGGCTCTGAAAATTGCAGATTTTGGGCTTGCAAATTCCTTTGATCTTAAACCTAAAGGTCCTCTCACAAATCGAGTGGTGACGCTCTGGTACAGAGCTCCTGAACTACTCCTGGGTTCAACAGATTATGGATTTGGCATTGATCTGTGGAGTGCTGGATGCCTTTTGGCTGAGATGTTTCTAGGAAAGCCCCTTATGCCTGGCAGGACTGagGTTGAACAGCTTCACCTGATCTTCAAACTGTGTGGCTCTCCTTCTGATGATTACTGGAAGAAATTGAAACTAATGACAAGTTATCGACCACCACATTACAAACCTAACTATGAAGAAGTATTCAAGGAATTTCCTCCTTCTTCTCATGGAATTTTGACCACACTACTTGATCTTGATCCTAACTATCGTGGAACAGCTGCCTCTGCCCTCCAAAGTGAATTCTTCAAGGCTAGTCCTTTACCATGTGACCTTTCAGCGTTACCAGTAATACACAAAGACGAGGATGAACGCTCACAAAGACGCAAAAGACACACGTCTTCCAAGAAACGGCTAATATCTCAAACAAATAACGGTACTCAGTCAGGAAAGAATCGAAATGCAACTGGAGAACTCAGCAGAGATTCAGAATCGTCAAAAGAGAAGAAGACTGTGGAAGCAGGCATACATGGGCAAGAAACAGGGAACAGCTCAAAAGAATATATGACAGAAAGGAGCATAAATACCTCTCTCACACTGTCCCCAGTTTTTCTGTCCAGTACTGAGAAAAAATCTCCCAGGACTGAGGCACATCCCAACGCTCTCAAGAACATCAAGAACTACAGCAACATGTTACAGGCATCTATGATTAATATGATGAATGGCAGAGAAGGCAATGAGCAGTTTCGCAAGTCCTTTTCTTCTGTGGATTTTCGATTTGATCCTGACAAATTTTCAAATCTCtatgaattaaataaaaggTTGAGCCATCAAAATTGA 1806 0.4181 MGCVNGKQSPSRIDGLKKRSGYVERVSASKPINHSFSNQRPQYSDNKTNMNSDQIKAHGISTSSSRNESGGVRVQAQVQGERKRANIGREDKNNNNNDVGNVSNRAVDKMIGRDEYVDGWPKWLVDNIPPQVLATLVPKSADSYEKLAKIGRGTYSNVYKARDKDTGKIVAMKKVRFDTSDSESIKFMAREIMILQKLNHPNVIKLEGLATSRMQYSLYLVFEYMQSDLTRIITRPSEKLTEPQIKRYMQQLLSGLQHCHKRGVMHRDIKASNLLVDKKGALKIADFGLANSFDLKPKGPLTNRVVTLWYRAPELLLGSTDYGFGIDLWSAGCLLAEMFLGKPLMPGRTEVEQLHLIFKLCGSPSDDYWKKLKLMTSYRPPHYKPNYEEVFKEFPPSSHGILTTLLDLDPNYRGTAASALQSEFFKASPLPCDLSALPVIHKDEDERSQRRKRHTSSKKRLISQTNNGTQSGKNRNATGELSRDSESSKEKKTVEAGIHGQETGNSSKEYMTERSINTSLTLSPVFLSSTEKKSPRTEAHPNALKNIKNYSNMLQASMINMMNGREGNEQFRKSFSSVDFRFDPDKFSNLYELNKRLSHQN 601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto4g0342 601 Gene3D Transferase(Phosphotransferase) domain 1 227 465 - -
Sto4g0342 601 SUPERFAMILY Protein kinase-like (PK-like) 138 431 IPR011009 -
Sto4g0342 601 MobiDBLite consensus disorder prediction 1 102 - -
Sto4g0342 601 ProSitePatterns Protein kinases ATP-binding region signature. 150 173 IPR017441 GO:0005524
Sto4g0342 601 ProSitePatterns Serine/Threonine protein kinases active-site signature. 264 276 IPR008271 GO:0004672|GO:0006468
Sto4g0342 601 ProSiteProfiles Protein kinase domain profile. 144 425 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sto4g0342 601 PANTHER CYCLIN-DEPENDENT KINASE 89 554 - -
Sto4g0342 601 MobiDBLite consensus disorder prediction 30 74 - -
Sto4g0342 601 PANTHER CELL DIVISION PROTEIN KINASE 89 554 - -
Sto4g0342 601 Gene3D Phosphorylase Kinase; domain 1 133 226 - -
Sto4g0342 601 MobiDBLite consensus disorder prediction 460 478 - -
Sto4g0342 601 MobiDBLite consensus disorder prediction 479 497 - -
Sto4g0342 601 CDD STKc_CDK9_like 144 425 - -
Sto4g0342 601 MobiDBLite consensus disorder prediction 441 512 - -
Sto4g0342 601 SMART serkin_6 144 425 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sto4g0342 601 Pfam Protein kinase domain 144 425 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto4g0342 Sto-Chr4 2675463 2679540 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto4g0342 129 460 Core Cell Cycle Gene Families AT5G10270 44.382 3.60e-95 299
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Sto4g0342 Pkinase 1.1e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto4g0342 K08819 - gmx:102667260 683.715