Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto4g0337 ATGCCTTCGTCAATGTTGATGGTATTTCCAGAAATCGATAGGGAGAAGGAGATGTGTGCTATGGTTTCAGCTTTAAGAAACGTTGTGTGTGGAGATGTGCCTTGTGTGGTTGAAGAAGCTGCTTCTTCTGCAAAACCCACATCAACAATTACaccatcttcttcatctccatgtaTGGCTATGAAGAGAAGCTGGGAAGATGCTACAACATCTTTATCATTTCCAGATTTGTCTTCATCACATGGAAGATCATCTTCATCCCATAGTTCCCCTGTCCCTGCTCTTCCAACAATTGGGAAATGGTCAAGCAACATTAGGCCGAGCACAAGAGCACAAGAAGTGGTGATTAATGATGATAGTGTGTACGAATACATAACAGCAAGAGAGAATggtgtggaagaagaagaagaagagaaggggCCGAGAAGAAAATACAGAGGAGTGAGGCAGAGGCCATGGGGGAAATGGGCGGCGGAGATCAGAGACCCAGTGAGAGCAGCGAGGGTATGGTTAGGCACATTCGACACAGCAGAAGGAGCAGCCAGAGCGTACGACCAAGCAGCCCTGCGTTTCAGAGGCAATAAGGCCAAACTTAATTTCCCTGAGAATGTCACTCTTCGCCATCCTCTTCCTCCTCAGAATCccattcttcatcatcatcactcaCTGCAGGCACAGGCACAGCAGCAAACTCCTCACATTCCTCATCCATTTCCTCCTCCCACTTCCATGAGTCTGTATGATCAGATGCTTCAacaacatcatcatcttcttctccactcctcatcttcttcttctcctccttcaaTCTACTCTGCTTCTCCGTATGTACCTTcttctacttctacttcttcttcttcttcttcttccacttaTTCAACTATGGGTTAtgcctcttcttcctctccatGA 912 0.3717 MPSSMLMVFPEIDREKEMCAMVSALRNVVCGDVPCVVEEAASSAKPTSTITPSSSSPCMAMKRSWEDATTSLSFPDLSSSHGRSSSSHSSPVPALPTIGKWSSNIRPSTRAQEVVINDDSVYEYITARENGVEEEEEEKGPRRKYRGVRQRPWGKWAAEIRDPVRAARVWLGTFDTAEGAARAYDQAALRFRGNKAKLNFPENVTLRHPLPPQNPILHHHHSLQAQAQQQTPHIPHPFPPPTSMSLYDQMLQQHHHLLLHSSSSSSPPSIYSASPYVPSSTSTSSSSSSSTYSTMGYASSSSP 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto4g0337 303 Pfam AP2 domain 144 193 IPR001471 GO:0003700|GO:0006355
Sto4g0337 303 CDD AP2 144 203 IPR001471 GO:0003700|GO:0006355
Sto4g0337 303 SUPERFAMILY DNA-binding domain 144 202 IPR016177 GO:0003677
Sto4g0337 303 Gene3D AP2/ERF domain 143 203 IPR036955 GO:0003700|GO:0006355
Sto4g0337 303 ProSiteProfiles AP2/ERF domain profile. 144 201 IPR001471 GO:0003700|GO:0006355
Sto4g0337 303 SMART rav1_2 144 207 IPR001471 GO:0003700|GO:0006355
Sto4g0337 303 MobiDBLite consensus disorder prediction 74 98 - -
Sto4g0337 303 PRINTS Ethylene responsive element binding protein signature 145 156 IPR001471 GO:0003700|GO:0006355
Sto4g0337 303 PRINTS Ethylene responsive element binding protein signature 167 183 IPR001471 GO:0003700|GO:0006355
Sto4g0337 303 MobiDBLite consensus disorder prediction 221 245 - -
Sto4g0337 303 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF110 13 297 - -
Sto4g0337 303 PANTHER DNA-BINDING DOMAIN 13 297 IPR044808 GO:0003700|GO:0009873
Sto4g0337 303 MobiDBLite consensus disorder prediction 260 303 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto4g0337 Sto-Chr4 2651529 2653279 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto4g0337 142 206 AP2-EREBP Transcription Factor Family AT5G61890 81.538 3.85e-33 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Sto4g0337 AP2 3.8e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto4g0337 - - aip:107621817 173.711
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto4g0337 4 2651529 2653279 Sto4g0337 4 2651529 2653279 ECH
Sto3g3144 3 36289181 36291384 Sto4g0337 4 2651529 2653279 ECH