Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto4g0335 ATGGACTTCGACGAGTACGATTACTTGGAGAAGACAGTGGAAGAGCAGGAGGATCTAGATTcgtcgaagaagaagaaggacagcAGCGAGAAGAGTGAAAGGAGTTATAGGAAGCGTGAGGTCGACGAGAATCTCGATGGTGAAGATAGGAAGAGCAAGAGGTCCAGAGGCGACGAGGAGAACGGCTCGAGGAAGGATCGTGATGACCGCGAGAGAGAACGGAGAAGCAGAAGTCGTTCTGATCGAGATAGGGAGAGAGAACGAGATTTGGAAATTAGAGATAACCGgagatttagggacaaaaaagaGACTGTGGAACCTGAGGCAGATCCAGAAAGGGATCAGAGAACTGTTTTTGCATACCAGATGCCCTTGAAGGCAACAGAGAGAGATGTTTATGAATTTTTCTCAAAAGCTGGCAAGGTGAGAGATGTCCGTTTGATCATGGATAGGAACTCAAGACGGTCTAAAGGAGTTGGCATTGCGATAATGATGAGGGATGATGGGAATACCATGCACTCATGTTTAATCAATTCATGCTGCGTACTCAAGGTAGATGACATAATCCTGGTTTTCTTTTTGGTCGTTTTCCCAGTTTTCTTCCTCTACGTGTGCGATACATCAAAAGAAACTCAGCTTGAGCTGTCTGCACTAGAGTTTTTGTTTCTCTACATCTCTTTGCTGTATGCTTTGtatattgaattttatgatGCAATGTCAGTTCCGATGGCAATTGCTCTCTCTGGTCAACTGCTTCTTGGACAACCTGTAATGGTCAAACCGTCTGAAGCTGAAAAGAACCTTGTTCAGTCTAATGCTTCCACTGGAGCTGCAGGTGTAGCAGGGCCATATGGAGCAGTAGACAGGAAACTGTATGTAGGGAACCTTCATTTCAACATGACAGAGAGTCAGCTGAGGGAGATTTTTGAGCCATTTGGTCCGGTGGAGCTTGTGCAACTGCCTCTTGACATGGAGACCGGACATTgcaagggttttggttttattcaATTTGCTCATCTTGAACATGCCAAAGCAGCTCAGAGTTTAAATGGAAAACTGGACATTGCTGGTAGGACTATCAAGGTTTCGTCTGTGACAGATCATGCTGGAAGCCAAGATACAAGTGCAAAATCTGCAGactttgatgatgatgaaggtggATTGTCTTTAAATGCCCAATCAAGAGCATTGCTTATGCAGAAGCTGGATCGTTCTGGCATTGCCACAAGCATTGCGGGGTCTGTTGGTGTGCCTGTTGTGAATGGGTCAGCTCCTGCTCAACAGGCTGCTAGCTTGCCTAGTGTGCCCGGTATAATGCCTGCATCAGCTCTCCCAACACAAATCATGCCTACCCCAGTTGTAGAACCTGTTGGAACCCCTAGCGAGTGTCTACTGTTGAAGAATATGTTTGATCCTACTACTGAGACGGAACCAGATTTTGATATTGACATTAAGGAGGATGTAGAAGAAGAATGCTCTAAATTTGGCAGGGTGAAGCATATTTATGTGGACAAAAGAAGCGCAGGATTTGTGTATTTGCGCTTTGAAACTGTGGAAGCAGCAAGTGGTGCTCAGCGTGCTATGCATATGAGATGGTTTGCACGCAGATTGATTTCAGCCACCTTCATGCAACCTCAGATATATGAAGCCAAGTTTAGAGCAGATGCTTGA 1671 0.4291 MDFDEYDYLEKTVEEQEDLDSSKKKKDSSEKSERSYRKREVDENLDGEDRKSKRSRGDEENGSRKDRDDRERERRSRSRSDRDRERERDLEIRDNRRFRDKKETVEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGIAIMMRDDGNTMHSCLINSCCVLKVDDIILVFFLVVFPVFFLYVCDTSKETQLELSALEFLFLYISLLYALYIEFYDAMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNASTGAAGVAGPYGAVDRKLYVGNLHFNMTESQLREIFEPFGPVELVQLPLDMETGHCKGFGFIQFAHLEHAKAAQSLNGKLDIAGRTIKVSSVTDHAGSQDTSAKSADFDDDEGGLSLNAQSRALLMQKLDRSGIATSIAGSVGVPVVNGSAPAQQAASLPSVPGIMPASALPTQIMPTPVVEPVGTPSECLLLKNMFDPTTETEPDFDIDIKEDVEEECSKFGRVKHIYVDKRSAGFVYLRFETVEAASGAQRAMHMRWFARRLISATFMQPQIYEAKFRADA 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto4g0335 556 SMART rrm1_1 117 180 IPR000504 GO:0003723
Sto4g0335 556 SMART rrm1_1 463 541 IPR000504 GO:0003723
Sto4g0335 556 SMART rrm1_1 290 363 IPR000504 GO:0003723
Sto4g0335 556 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 116 161 IPR000504 GO:0003723
Sto4g0335 556 SUPERFAMILY RNA-binding domain, RBD 55 165 IPR035979 GO:0003676
Sto4g0335 556 CDD RRM1_RBM39_like 117 260 - -
Sto4g0335 556 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 289 367 IPR000504 GO:0003723
Sto4g0335 556 CDD RRM2_RBM23_RBM39 291 363 - -
Sto4g0335 556 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 123 161 IPR000504 GO:0003723
Sto4g0335 556 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 291 361 IPR000504 GO:0003723
Sto4g0335 556 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 485 538 IPR000504 GO:0003723
Sto4g0335 556 MobiDBLite consensus disorder prediction 1 88 - -
Sto4g0335 556 CDD RRM3_RBM39_like 461 543 - -
Sto4g0335 556 Gene3D - 46 275 IPR012677 -
Sto4g0335 556 SUPERFAMILY RNA-binding domain, RBD 289 545 IPR035979 GO:0003676
Sto4g0335 556 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 232 555 - -
Sto4g0335 556 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 69 161 - -
Sto4g0335 556 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 1 74 - -
Sto4g0335 556 TIGRFAM SF-CC1: splicing factor, CC1-like family 232 552 IPR006509 GO:0003723|GO:0005634|GO:0006397
Sto4g0335 556 MobiDBLite consensus disorder prediction 15 88 - -
Sto4g0335 556 Gene3D - 457 556 IPR012677 -
Sto4g0335 556 Gene3D - 285 382 IPR012677 -
Sto4g0335 556 PANTHER CC1-LIKE SPLICING FACTOR 232 555 - -
Sto4g0335 556 PANTHER CC1-LIKE SPLICING FACTOR 1 74 - -
Sto4g0335 556 PANTHER CC1-LIKE SPLICING FACTOR 69 161 - -
Sto4g0335 556 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 382 480 IPR029123 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto4g0335 Sto-Chr4 2618754 2624576 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto4g0335 260 351 Eukaryotic Initiation Factors Gene Family AT3G11400 32.110 3.08e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto4g0335 K13091 - jre:109009989 542.732
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto4g0335 4 2618754 2624576 Sto4g0335 4 2618754 2624576 ECH