Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto4g0327 ATGGATTTGGACGATTTCCGATCTATATTGGAGACTGCAGGCGTTGACGTGTGGACCTTCATCGACACCGCAATCACCGTCGCTGCTTTGGATTACGGCAATGATTTGAAGCATCGCCGGGATGGAATCGTTGAGCGCCTCTATGTGGTGACTTCAGCTCCGGCGTCGTGTCTGAATTGCGAGCCCAATCATGTCAGGTCTAATAACGGCCACGGAATTAGCGCGCCAATCAGGAGACAGAGCAGTCCACCGGCGGAGAAAAGGCGTGCCTCGCCTGCTACGCCGCAATCACTTGgtaaagatgaagaagaagacgacgagataGATCCTTACGGAGGCTTGTTCGACGATGAGCAGAAGAAGATTCTGGAGATTAAAGAGCAACTTGAAGAACCTAACCAGTCTGAAGAATCATTGGTGGATTTGCTTCAAAACCTAGCAGACATGGATATTACATTCCAAGCTTTAAAGGAGACTGACATTGGGAGGCACGTAAATCGTTTACGAAAGAATTCATCCAATGATGTTCGGAGATTGGTGAAGCTCCTTGTCAGGAAATGGAAAGATATTGTGGATGAATGGGTGAAGTTGAATCCACCAGGAGAGCACGCTTCACTCATGGCTGATGGAGACTCACCCCCGCAAAGAAACCCCCAAAACGGGCATAATCAGATTCCTGATTTTGCGTACTCACCCAATCCACACAATGGGAGCTCTGGGTCAGACCGGAATGATTCAGAAGCAGAGccaaaacaaaaatcaattCCTCGAAAAGAGGCTCCACCAAAGCCATTGCCTTCTGTACCTACTCCTGCTTCTGCTCCTCAAAACGTACGAATGAGAGAACAGAGAGAGAGTAATTTTGACGCAGAGAGACTTGCTTCGGCAAGAAGACGGCTTCAAGAGAACTACAAGGAGGCTGAAAATGCCAAAAGGCAAAGAACGATTCAGGTGATGGACATCCATGATCTACCAAAACCAAAGTCCAAGAATGCCTTCTTTCCAAAGAACAAAGGCGGTGGCGGTTCTCAGGGAAGGCACTGGTGA 1047 0.4661 MDLDDFRSILETAGVDVWTFIDTAITVAALDYGNDLKHRRDGIVERLYVVTSAPASCLNCEPNHVRSNNGHGISAPIRRQSSPPAEKRRASPATPQSLGKDEEEDDEIDPYGGLFDDEQKKILEIKEQLEEPNQSEESLVDLLQNLADMDITFQALKETDIGRHVNRLRKNSSNDVRRLVKLLVRKWKDIVDEWVKLNPPGEHASLMADGDSPPQRNPQNGHNQIPDFAYSPNPHNGSSGSDRNDSEAEPKQKSIPRKEAPPKPLPSVPTPASAPQNVRMREQRESNFDAERLASARRRLQENYKEAENAKRQRTIQVMDIHDLPKPKSKNAFFPKNKGGGGSQGRHW 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto4g0327 348 Coils Coil 290 317 - -
Sto4g0327 348 MobiDBLite consensus disorder prediction 66 113 - -
Sto4g0327 348 ProSiteProfiles TFIIS N-terminal domain profile. 117 194 IPR017923 -
Sto4g0327 348 Pfam TFIIS helical bundle-like domain 142 191 IPR017923 -
Sto4g0327 348 MobiDBLite consensus disorder prediction 242 258 - -
Sto4g0327 348 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 119 202 IPR035441 -
Sto4g0327 348 MobiDBLite consensus disorder prediction 202 348 - -
Sto4g0327 348 MobiDBLite consensus disorder prediction 212 241 - -
Sto4g0327 348 SMART TFS2_5 122 193 IPR003617 GO:0005634
Sto4g0327 348 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 116 203 IPR035441 -
Sto4g0327 348 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26C-RELATED 1 348 IPR044790 -
Sto4g0327 348 MobiDBLite consensus disorder prediction 282 329 - -
Sto4g0327 348 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26C-RELATED 1 348 - -
Sto4g0327 348 CDD TFIIS_I 119 192 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto4g0327 Sto-Chr4 2557606 2559562 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Sto4g0327 Med26 1.2e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto4g0327 - - aip:107622503 510.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto4g0327 4 2557606 2559562 Sto4g0327 4 2557606 2559562 ECH
Sto3g3151 3 36384886 36386674 Sto4g0327 4 2557606 2559562 ECH