Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto4g0320 ATGGTCCTCTCTGTCCTGTTATGTGCCCTGATTTGCTCTCTGGGCCTAAACTCCATCATAAGGTGTGCCTTAAGATGCTCCAACATAACTTCATCATCAACGTCCAACCCTCCATCATTAGTCCCACATCGTCCGGCGGCGGCCAACACGGGGGTGAAGAAGAAGGCCCTCAAGACCTTCCCCACCATCACGTATGACCAGAAACTCCCTGGCTTGGACGACACAGAGTGCGCCATATGCTTGTGCGATTTTTCCAACGGAGATAGGCTTCGAATCCTCCCAAAGTGCAACCACGGCTTCCACGTGCGATGCATTGACAAGTGGCTCAATTCGCACTCTTCCTGTCCCAAGTGTAGGCACTGTCTCATACACACTTGTGAGAAGATCGTTGGGTGTGCCAGCAGTGGCGGTATTACGACGACGTCACAGGCTCAGGGTGGCTCGTCGCAAGTGGAGACCATGGTTAGGATTATTGCGCCGCTCGAACCAGAAGACCCTCCCATTCTCGTTCTCAGTGGCTACGCCTCAAACCCCTACGAAGCTGTCCACACAGAAAGAGAATCGCCCAAACCAAGCCTTCGTCTTCTTTGGAGGTTGGCTTGGTTATTCTTCATCGCCTTCCTACTATTTCCGATTCCCCTCTCTACTTCTAGGTAA 657 0.5236 MVLSVLLCALICSLGLNSIIRCALRCSNITSSSTSNPPSLVPHRPAAANTGVKKKALKTFPTITYDQKLPGLDDTECAICLCDFSNGDRLRILPKCNHGFHVRCIDKWLNSHSSCPKCRHCLIHTCEKIVGCASSGGITTTSQAQGGSSQVETMVRIIAPLEPEDPPILVLSGYASNPYEAVHTERESPKPSLRLLWRLAWLFFIAFLLFPIPLSTSR 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto4g0320 218 PANTHER RING-H2 FINGER PROTEIN ATL78 1 165 - -
Sto4g0320 218 SUPERFAMILY RING/U-box 61 124 - -
Sto4g0320 218 ProSiteProfiles Zinc finger RING-type profile. 77 119 IPR001841 -
Sto4g0320 218 CDD RING-H2_PA-TM-RING 76 119 - -
Sto4g0320 218 PANTHER RING-H2 FINGER PROTEIN ATL78 1 165 IPR044602 GO:0016567|GO:0016740
Sto4g0320 218 SMART ring_2 77 118 IPR001841 -
Sto4g0320 218 Pfam Ring finger domain 76 119 IPR001841 -
Sto4g0320 218 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 41 123 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto4g0320 Sto-Chr4 2487607 2496127 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto4g0320 1 123 C3H Transcription Factor Family AT3G10910 50.781 3.88e-37 126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto4g0320 K19040 - mnt:21391295 200.675
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto4g0320 4 2487607 2496127 Sto4g0320 4 2487607 2496127 ECH