Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto4g0314 ATGGTGATGAGGGATGATCTGTGCGTCACAGTTCCGAGCTTCTTCCGGTGTCCCATATCACTTGACGTCATGAAGTCTCCGGTCAGCCTCTGCACCGGCGTCACCTACGACCGTTCCAGCATCCAACGCTGGCTTGACAACGGCAACAACACCTGCCCCGCCACCATGCAGGTCCTTCAAACCAAGGAATTCGTTCCCAACCGTACTCTACACAGGCTTATCCAGATCTGGACCGACTCGGTTCAACACCGAGTCGACTCGCCCGTTTCCAAATCGGTACCTTCAAAGGATCAACTCCTCCGCGCTATCACAGCCATGGAGAGCCACAGCGAGAAAGAGAATCGGTCTCATTCTCTCGCGCAAATTCTATCCTTCGCTCAACAATCTGAGGAAAACCGAGAATTCCTCGCGAAATTGGAGCGGTTAGTGCCTCTGCTCGTTGGCTTCCTCCACAATAATGTCAATGTCGATGATGGTGGTGAAGTTACAGAAGCTGTTGAGTTTCTTGAGAGAGTCGTGACGGCGTTGGATTTGGTTGTGAGTAAAACGGAAGACGGTGAGGCATTGAAGAATTCGATGTTGAAGAGGCAAGAAGGTAATTCGAATTGCTTAGCTTCTATTCTTCTCGTTCTGCAACGAGGCAGCTCCGATTCCAAAATCGCATCGGCGAGGATTCTGAAATTCATCGCCGTGGACGTTGAGTCGAAATCCTTGATTGCAGAAAAGGAAGGCCTAATGTGCGAATTGATTAAGCTAATCGCGCCAGAGAAAGACGCGGTGGTGATCGAGAACGGCTTATCGTGCCTAATTGCAATCTCAACGCCGAAACGAAACAAGACGAAGTTAGTCCATCTCGGAGCTGTGAAGGCATTATCGGATTTACTCTCGTCGGAGTCGAAGTGGAGCGCTTCCATCAGCGAGAAGGCGCTGAAGCTGCTGGAAACGGTGTCGTCGAGCAAGGAAGGGAGGTCGGAGATCTGTGAGGACGCGAATTGCGTGGCGGCGATATTGCAGAAGATGCTGAAAGGATCGAGCGAGGCGACGGAGCACGCGGTGTCGATACTGTGGAGTGTGTGCTACGTGTTTCGTGACCAGAAGGCGCATGAAGCGGTGACGAAGGCGAATGGCTTGACGAAGATTCTGCTTCTGATGCAGAGCAATTGTTCGTTAGGAGACGCACAGATTTTAgaagaaacaacaaaaaaaacaaaagcaagTTTGTAA 1224 0.5 MVMRDDLCVTVPSFFRCPISLDVMKSPVSLCTGVTYDRSSIQRWLDNGNNTCPATMQVLQTKEFVPNRTLHRLIQIWTDSVQHRVDSPVSKSVPSKDQLLRAITAMESHSEKENRSHSLAQILSFAQQSEENREFLAKLERLVPLLVGFLHNNVNVDDGGEVTEAVEFLERVVTALDLVVSKTEDGEALKNSMLKRQEGNSNCLASILLVLQRGSSDSKIASARILKFIAVDVESKSLIAEKEGLMCELIKLIAPEKDAVVIENGLSCLIAISTPKRNKTKLVHLGAVKALSDLLSSESKWSASISEKALKLLETVSSSKEGRSEICEDANCVAAILQKMLKGSSEATEHAVSILWSVCYVFRDQKAHEAVTKANGLTKILLLMQSNCSLGDAQILEETTKKTKASL 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto4g0314 407 Pfam U-box domain 11 79 IPR003613 GO:0004842|GO:0016567
Sto4g0314 407 CDD RING-Ubox_PUB 15 57 IPR045210 -
Sto4g0314 407 PANTHER WDSAM1 PROTEIN 5 396 IPR045185 GO:0061630
Sto4g0314 407 SMART Ubox_2 14 77 IPR003613 GO:0004842|GO:0016567
Sto4g0314 407 ProSiteProfiles U-box domain profile. 10 84 IPR003613 GO:0004842|GO:0016567
Sto4g0314 407 Gene3D - 89 401 IPR011989 -
Sto4g0314 407 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 7 88 IPR013083 -
Sto4g0314 407 SUPERFAMILY RING/U-box 6 81 - -
Sto4g0314 407 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 286 331 IPR000225 GO:0005515
Sto4g0314 407 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 27-RELATED 5 396 - -
Sto4g0314 407 SUPERFAMILY ARM repeat 195 386 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto4g0314 Sto-Chr4 2423489 2424862 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto4g0314 4 406 U-box Gene Family AT5G64660 49.392 9.74e-121 355
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto4g0314 4 2423489 2424862 Sto4g0314 4 2423489 2424862 ECH
Sto3g3171 3 36574690 36575940 Sto4g0314 4 2423489 2424862 ECH