Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto4g0312 ATGCTTAATTCTAATGAAGCAAATACTGAGATATTCTTTGACTCTTTGGATTCCCTGTCACCTCAGGACTCTTCTTCTGTGTATGAAGTTTGGTTGAATGAGCCTGAGAGTGTGAAGGAAAGACGACGTCGTTTTCTACAGGAGATAATGGATTTACCTGATCTCTCTTCCAAGGATTATTCTCAAGAGAATAAGAATAACACCTTGATTGAAGCAAACTTTTTGCTTGATGAACATATTGGGTGTCAAAAAGATGCAAACTTTGAGAGAAAAGTGCATCAATTGTCTTGTTCAGGTGAAGAACAAAGACACCCAGAAGCTGAATTTGGTGCTTTTGGTatgggaaaaaagaagaagaagatgaaaaactGGTGGAAGTACTTTGTGGAAAGTAGGAAAGGCAAAGTTAGATcaaaattgaagaaagagaTGGGTGAGAGTAGAAGAGTGAATGTGAAGCAGAAAAGAAAGAAGTGGATGGAGTtgagtgatttgtattttggaCAAGAGATAAAAGCTCACAAAGGCCTAATTTGGACCATCAAGTTTAGTGCCAATGGTCAATATCTAGCAAGTGGAGGTGAAGATGGAGTAGTACGTGTATGGCGTATTGTATCAAACCAACCCTTCCTACTCCATCCAAACAAGGCTTTCCAAATTGAGGAATCGCCACTTCAAGAATTCTATGGTCATTCTAGTGATGTTTTGGATTTGGCTTGGTCTGATTCAGATATTCTACTTTCGTCTTCGATGGATAAAACAGTTCGCTTGTGGCAAATTGGTTGTAATCAATATCTGAGTGTCTTCCAACATAATGACTATGTGACATGCATTCAATTCAATCCAGTTGATCACAATTACTTCATTAGTGGATCTATAGATGGTAAAGTGAGAATATGGGGGGTATGTGAAGAGAGAGTTGTAGATTGGGCTGATATAAGAGATGTCATCACTGCTATAAGTTACCAGCCAGATGGGGAGGGGTTTATAGTTGGTTCCATTACAGGAGCTTGTAGGTTTTATGCTTTATCTGGCAAACATTTCCAGCTTGAGGCACAGATATGGCTTCgtggaaagaagaaaaatactggAAACAAGATTACTGGCATTCAGTTTTCCCAGGAAAAACACAAGAGAGTTATGATCACATCAGAAGATTCCAAAGTTCGAGTATTTGATGGCATTCAACTTGTCCAGAAATTTAAAGGTCTTCCAAAGTCAGGAAGCCAAATGTCTGGTTCATTTACATCAAGTGGAAAGCATATAATTTCAGTTGGAGATGACTCCCATGTGTACATTTGGAACCTTAATGACATGGAAAATGCATCATCCAAACAGGTCATAAAATCTAACCATTCCTATGAGTACTTTTTCACAGAGGGTGTTACTATTGCAGTACCATGGTCAGGCATGAATAGTACATCTTCCCTAGAAATACAAGATCACCAAGAAGCTTCGTCCGGCGGCGTCAGAGAATCGGAGCGATTTTCTCTCGGTAACTGGTTGAACATTGATGGAACATGTCGCCGAGGTTCCGTGACATGGCCGGAGGAGAAACTTCCTAGTTGGGATTTGGATTTTCTAGAAGATGAACATGAAAGATGTGTATTGGAAACATGGGGACTATCCATTGTGGTAGCTGATTTAGATGGAAGTATTAAGACATTCCATAACTTTGGATTGCCTGTGAGGCTTTAG 1698 0.3787 MLNSNEANTEIFFDSLDSLSPQDSSSVYEVWLNEPESVKERRRRFLQEIMDLPDLSSKDYSQENKNNTLIEANFLLDEHIGCQKDANFERKVHQLSCSGEEQRHPEAEFGAFGMGKKKKKMKNWWKYFVESRKGKVRSKLKKEMGESRRVNVKQKRKKWMELSDLYFGQEIKAHKGLIWTIKFSANGQYLASGGEDGVVRVWRIVSNQPFLLHPNKAFQIEESPLQEFYGHSSDVLDLAWSDSDILLSSSMDKTVRLWQIGCNQYLSVFQHNDYVTCIQFNPVDHNYFISGSIDGKVRIWGVCEERVVDWADIRDVITAISYQPDGEGFIVGSITGACRFYALSGKHFQLEAQIWLRGKKKNTGNKITGIQFSQEKHKRVMITSEDSKVRVFDGIQLVQKFKGLPKSGSQMSGSFTSSGKHIISVGDDSHVYIWNLNDMENASSKQVIKSNHSYEYFFTEGVTIAVPWSGMNSTSSLEIQDHQEASSGGVRESERFSLGNWLNIDGTCRRGSVTWPEEKLPSWDLDFLEDEHERCVLETWGLSIVVADLDGSIKTFHNFGLPVRL 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto4g0312 565 ProSiteProfiles Trp-Asp (WD) repeats profile. 228 268 IPR001680 GO:0005515
Sto4g0312 565 PANTHER WD REPEAT DOMAIN 44 206 565 IPR040324 -
Sto4g0312 565 PANTHER WD REPEAT DOMAIN 44 70 207 IPR040324 -
Sto4g0312 565 PANTHER WD REPEAT DOMAIN 44 1 64 IPR040324 -
Sto4g0312 565 Pfam WD domain, G-beta repeat 266 300 IPR001680 GO:0005515
Sto4g0312 565 Pfam WD domain, G-beta repeat 170 202 IPR001680 GO:0005515
Sto4g0312 565 Pfam WD domain, G-beta repeat 223 258 IPR001680 GO:0005515
Sto4g0312 565 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 268 300 - -
Sto4g0312 565 ProSiteProfiles Trp-Asp (WD) repeats profile. 268 300 IPR001680 GO:0005515
Sto4g0312 565 SUPERFAMILY WD40 repeat-like 164 441 IPR036322 GO:0005515
Sto4g0312 565 PRINTS G protein beta WD-40 repeat signature 190 204 IPR020472 -
Sto4g0312 565 PRINTS G protein beta WD-40 repeat signature 246 260 IPR020472 -
Sto4g0312 565 PRINTS G protein beta WD-40 repeat signature 288 302 IPR020472 -
Sto4g0312 565 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 171 204 - -
Sto4g0312 565 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 228 260 - -
Sto4g0312 565 ProSiteProfiles Trp-Asp (WD) repeats profile. 414 444 IPR001680 GO:0005515
Sto4g0312 565 Gene3D - 158 462 IPR015943 GO:0005515
Sto4g0312 565 SMART WD40_4 164 203 IPR001680 GO:0005515
Sto4g0312 565 SMART WD40_4 262 301 IPR001680 GO:0005515
Sto4g0312 565 SMART WD40_4 349 393 IPR001680 GO:0005515
Sto4g0312 565 SMART WD40_4 394 435 IPR001680 GO:0005515
Sto4g0312 565 SMART WD40_4 221 259 IPR001680 GO:0005515
Sto4g0312 565 SMART WD40_4 303 342 IPR001680 GO:0005515
Sto4g0312 565 ProSiteProfiles Trp-Asp (WD) repeats profile. 171 212 IPR001680 GO:0005515
Sto4g0312 565 PANTHER TRANSCRIPTION FACTOR WD40-LIKE FAMILY-RELATED 206 565 - -
Sto4g0312 565 PANTHER TRANSCRIPTION FACTOR WD40-LIKE FAMILY-RELATED 70 207 - -
Sto4g0312 565 PANTHER TRANSCRIPTION FACTOR WD40-LIKE FAMILY-RELATED 1 64 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto4g0312 Sto-Chr4 2407127 2410715 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto4g0312 225 432 U-box Gene Family AT2G33340 29.358 2.90e-10 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto4g0312 K20241 - gmx:100801576 660.218
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto4g0312 4 2407127 2410715 Sto4g0312 4 2407127 2410715 ECH