Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto4g0304 ATGAGTGGAGGTGGCAGAAAGCGTGGTACGAAGTGGGATTTAAGAGAAGAGCCTGAATTTGCATCTGATAGTAAGCAATTGCGATATGCTGGTAGCAATAGTTCAAAGTGGTCTTATTTGGAAGGGAATGATAAGCAGAGACCTAATCTGGGACTGGGATTACCATCCAAGGAACCTTTTTCTGGGGGCAGAGTTTCAAACAAGgatgatattattaataaagACTACAATAGGGATTTGGATATCAAAATGGCATGGGATGCAGATGAAAGTTACAGCATGAAAATGTCTCCAGGGTTTGAGGACTGGAAGCATAAGATGCATAGTCAATCCCCAAAAAATGGTTGGGACAGGTTTAGGAGTAGGAGCCGGAGCCGGAGCCCTGTCCGTGGTATTAGGTTGGAATCAGGAGTGAATGacagaaatagaatgagaactGGAGGATTGCCGCCACCCTGTAGAGATTTTGTTGCTGGGAAATGCCGAAGAGGCAACCGATGTCACTTTTTTCACCATGATATCCAAAATTACGAGGATAGCTGGGAAAGTAGAAACAGGAAAGATGGACTTCCCAGATATTCTGCTACCCATGAGAGTAGGGACTATTCTGTTAGGAGTGGTACTTGTATTAATTTTGCACAAGGCAAGTGTAGAATGGGTGCATCTTGCAAGTATGTGCATCACAGCAATTCTGATGAACTCAGCAAGGGTACTGCAGATGAAACAAGGGAATATGATCGAAGGCGCAGAGAGAATTCTTTTGAGCGGGGTGGTGGGCATGAGCCAAACCGCAGTGGTGATACACCCTGCAAATTTTATGCTGCAGGAAACTGTCGCAATGGTAAATATTGCAGGTTTTCTCATGATATGCAGGCATCTAGGAGTCCAAATAGAAGACTGCGGGATGATAGGTGGGGGAGCAATTTGGGTGGAGATCGGGCATTGGATAGATTGAAAGGGAGTAACTCAGTTAGTCCTACTAGAAGGCCAGGAGATGATAGATGGGGTCCAGATGGCAACATGGTTGATGTGGATAAAGTATGGGATGGTCCAAAACTGAATGATACAATTGCTGCCTCGGATGCAGAAAAGCTGGATGAAGACAATAGTCGAAATATGGGTGCTCCTGAACCAGGCTTCCCTAGTTGGCCCAAGGGTGATGGATGGGGAAATAGTTTTGATAACAACAAAGTGTATGCTGAGCCACCGTTTGTCGGCGATAAAAAGAAGGCAGACCTATGGAAGGCAGAAAATGCTGGTGCTACCGTGGGTGTCCCCCAGGCAATAGGTACAGACAAATGGCTTGGGGATGCAGAAATGTCTCCTGATTGGAATTACAGAGTGGGATCGTCTGGTAGTATTGAAGACAAGAGTGGACAGAATAAACATGGGTTAACCCAGGGTGGTCCATATTTAGCCACCTCCGAACATCACCAATTACAAGCCTGTAGTGTGGTTGGTCAAAGTCAAGTGGCAGTCCCCGTTGTTCCTCCACTTGGAGGGATAGTTGAAGCTATACAGAATCAAGAAGTGTCTGCTGTCAAAAAGTACAGTGTTGAACCTAATATCTTGGATGCAAACTCATCACAAGTTAGTGCTAGAAATACTCCAACTCAGAACATGGTGAGCAACGAACAGCTCGCTCAACTTAGCAGCCTATCAGCCTCTCTGGTTCATTTCCTTGGAACAAGTCAGCAGCTTCCACAAATTTATGCTGCTATAAATTCTCATGTAGCAAGTGAAACTCCCTCCCTTGTCAAAACTGAAGGGCCTGGTGAGCCTGTTTCAAGTTCATTTATCAAGCCAGATCCTTCTGTTGGATTCCAGAAGCAGTATGATCCGATGTGTGATAGTATCGAGCCGAAGAAGGCTGAAACAAGTGGCATCACCCCAGCCCTATCTCCTATTAAACCAATTATAGAAACTCCATCAATGTTGTCTAATTCAGGGAGACAAAATCTGGTCCAGTTGCAGCCAGATAAAAACATTGATATTAACAAGGGAAATAATGAAGTGGTTGCAGAGGAAAAGCAAGATTCTCGAGAAGATCAGAGGAATGCTAAGGATAATGGTCCTTTGGAAAATACGGATCAAAATGGGCCTGATGAAGCCAAGAAAATGAAGGACGTGAAGGGGATCCGTGCTTTTAAATTTGCACTGGTGGAGTTCGTTAAGGAGCTTCTGAAACCAACATGGAAGGATGGTAAAATCAATAAGGAAGATTACAAGACAATTGTGAAGAAAGTTGTTGACAAAGTAACTGGTACCATGCAAGGGGCTCATATCCCACAGACGCAAGAGAAAATTGATCACTACTTAACAATTTCAAAACCAAAGCTTAACAAACTTGTACAGGTCAGTGATGGTTCATTTACATGTTGCCATTATATGTGA 2394 0.4353 MSGGGRKRGTKWDLREEPEFASDSKQLRYAGSNSSKWSYLEGNDKQRPNLGLGLPSKEPFSGGRVSNKDDIINKDYNRDLDIKMAWDADESYSMKMSPGFEDWKHKMHSQSPKNGWDRFRSRSRSRSPVRGIRLESGVNDRNRMRTGGLPPPCRDFVAGKCRRGNRCHFFHHDIQNYEDSWESRNRKDGLPRYSATHESRDYSVRSGTCINFAQGKCRMGASCKYVHHSNSDELSKGTADETREYDRRRRENSFERGGGHEPNRSGDTPCKFYAAGNCRNGKYCRFSHDMQASRSPNRRLRDDRWGSNLGGDRALDRLKGSNSVSPTRRPGDDRWGPDGNMVDVDKVWDGPKLNDTIAASDAEKLDEDNSRNMGAPEPGFPSWPKGDGWGNSFDNNKVYAEPPFVGDKKKADLWKAENAGATVGVPQAIGTDKWLGDAEMSPDWNYRVGSSGSIEDKSGQNKHGLTQGGPYLATSEHHQLQACSVVGQSQVAVPVVPPLGGIVEAIQNQEVSAVKKYSVEPNILDANSSQVSARNTPTQNMVSNEQLAQLSSLSASLVHFLGTSQQLPQIYAAINSHVASETPSLVKTEGPGEPVSSSFIKPDPSVGFQKQYDPMCDSIEPKKAETSGITPALSPIKPIIETPSMLSNSGRQNLVQLQPDKNIDINKGNNEVVAEEKQDSREDQRNAKDNGPLENTDQNGPDEAKKMKDVKGIRAFKFALVEFVKELLKPTWKDGKINKEDYKTIVKKVVDKVTGTMQGAHIPQTQEKIDHYLTISKPKLNKLVQVSDGSFTCCHYM 797
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto4g0304 797 MobiDBLite consensus disorder prediction 670 690 - -
Sto4g0304 797 MobiDBLite consensus disorder prediction 229 262 - -
Sto4g0304 797 MobiDBLite consensus disorder prediction 657 704 - -
Sto4g0304 797 MobiDBLite consensus disorder prediction 292 310 - -
Sto4g0304 797 MobiDBLite consensus disorder prediction 1 69 - -
Sto4g0304 797 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 1 785 - -
Sto4g0304 797 Pfam CCCH-type zinc finger 269 289 IPR041367 -
Sto4g0304 797 MobiDBLite consensus disorder prediction 228 270 - -
Sto4g0304 797 ProSiteProfiles Zinc finger C3H1-type profile. 147 175 IPR000571 GO:0046872
Sto4g0304 797 ProSiteProfiles Zinc finger C3H1-type profile. 264 291 IPR000571 GO:0046872
Sto4g0304 797 SMART c3hfinal6 147 173 IPR000571 GO:0046872
Sto4g0304 797 SMART c3hfinal6 264 290 IPR000571 GO:0046872
Sto4g0304 797 SMART c3hfinal6 205 229 IPR000571 GO:0046872
Sto4g0304 797 MobiDBLite consensus disorder prediction 8 23 - -
Sto4g0304 797 Pfam RNA-binding, Nab2-type zinc finger 152 171 - -
Sto4g0304 797 Pfam RNA-binding, Nab2-type zinc finger 209 227 - -
Sto4g0304 797 MobiDBLite consensus disorder prediction 26 42 - -
Sto4g0304 797 MobiDBLite consensus disorder prediction 364 383 - -
Sto4g0304 797 MobiDBLite consensus disorder prediction 584 604 - -
Sto4g0304 797 ProSiteProfiles Zinc finger C3H1-type profile. 203 230 IPR000571 GO:0046872
Sto4g0304 797 MobiDBLite consensus disorder prediction 290 339 - -
Sto4g0304 797 Gene3D - 263 330 - -
Sto4g0304 797 Gene3D - 149 244 - -
Sto4g0304 797 SUPERFAMILY CCCH zinc finger 267 289 IPR036855 GO:0046872
Sto4g0304 797 PANTHER ZINC FINGER CCCH DOMAIN PROTEIN-RELATED 1 785 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto4g0304 Sto-Chr4 2351114 2354264 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Sto4g0304 zf-CCCH 0.00018 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto4g0304 - K22909 gmx:100783856 954.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto4g0304 4 2351114 2354264 Sto4g0304 4 2351114 2354264 ECH