Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto4g0303 ATGGATATCAATAATAACAACATTAATTCTCTTTGTGTCAACACCACCACTTGGAATCTTGACAAGATCATGGAGATGCTTTACAAGATCGCGGCTATGCAGCCGGTGGACATAGACCCGGCCACCATCCGGAAGCCGAAGAGGCGAAACGTGAGAATTAGCGACGATCCTCAGAGTGTCGCGGCCAGACACAGGCGAGAGAGGATCAGTGAGAAGATCCGAATCCTTCAGAGACTCGTCCCCGGAGGCACCAAGATGGACACCGCATCCATGCTTGACGAAGCCATTCGCTATGTCAAGTTCTTGAAGAGGCAGATCAAGTTGCTCCAAACTCACTCTCAACaatcacaacaacaacaatcacaCTCCAATGTCCCTATTCCCATCCCTATCCCTAGCTCTACTACTCACAACAATAATAGTCTTGCAATTGGGAATAATATTGCCCTTCCCCTTCCCAATCACACTCTCACCTCTCCTAATAATATTCCATTCCCTATGGACTGGCCTTTTGCACCACCAAATATGTCCTCCACCGCCGCCCTAGACTTGCCGCCCGGCCTGAGATTCGGCCATGGCAACGGCTTCGTGTAA 594 0.4815 MDINNNNINSLCVNTTTWNLDKIMEMLYKIAAMQPVDIDPATIRKPKRRNVRISDDPQSVAARHRRERISEKIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIKLLQTHSQQSQQQQSHSNVPIPIPIPSSTTHNNNSLAIGNNIALPLPNHTLTSPNNIPFPMDWPFAPPNMSSTAALDLPPGLRFGHGNGFV 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto4g0303 197 Gene3D - 56 125 IPR036638 GO:0046983
Sto4g0303 197 MobiDBLite consensus disorder prediction 112 140 - -
Sto4g0303 197 SMART finulus 59 108 IPR011598 GO:0046983
Sto4g0303 197 CDD bHLH_AtIND_like 54 111 - -
Sto4g0303 197 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 58 121 IPR036638 GO:0046983
Sto4g0303 197 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 53 102 IPR011598 GO:0046983
Sto4g0303 197 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 19 149 - -
Sto4g0303 197 Pfam Helix-loop-helix DNA-binding domain 63 102 IPR011598 GO:0046983
Sto4g0303 197 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 19 149 IPR045843 GO:0003700|GO:0006355
Sto4g0303 197 Coils Coil 99 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto4g0303 Sto-Chr4 2336411 2337244 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto4g0303 25 114 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00120 81.111 2.32e-47 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Sto4g0303 HLH 8.1e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto4g0303 - - gmx:100775296 177.178
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto4g0303 4 2336411 2337244 Sto4g0303 4 2336411 2337244 ECH