Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto4g0275 ATGGAAGATGAGAGCCACACCAATTTGCCAAATGGGGTCAAATCCGAAAGCCCTCAAAGCCCTAATTGCTTAAAGACAAacaacaataacaaagaACAGGATCGGTTCCTCCCGATCGCGAACGTGGGGAGAATCATGAAGAAAGTGATGCCGGGGAACGGGAAGATCTCGAAGGACGCGAAAGAGACGGTTCAAGAATGTGTTTCGGAGTTCATAAGCTTCGTGACCGGAGAAGCATCCGATAAATGCCaaagagagaagaggaagaccATCAATGGTGATGACATCATATGGGCCATCACAACCCTAGGGTTTGAAGATTATGTGGAACCATTGAAATCTTACCTTCAGAAGTATAGAGACATAGAAGGAGAAAAGGTTAATATCCCAAAACAACAACGTTCTGATCAAAGGaataataataatttggcatTAAATAGTGTATATTCTTCAACAAATATTATTTCTCAGCCTCCTTATAATGTGGGAAGTACTAGTGATCTTCATCACCAGACATATTCTCTGCCTTTCTCTCCAAATTCATTTCAGAAACAGTTACAGCCACAAGATCAGATTGATTCAGTGGGGCATTGGTAA 597 0.3853 MEDESHTNLPNGVKSESPQSPNCLKTNNNNKEQDRFLPIANVGRIMKKVMPGNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDIIWAITTLGFEDYVEPLKSYLQKYRDIEGEKVNIPKQQRSDQRNNNNLALNSVYSSTNIISQPPYNVGSTSDLHHQTYSLPFSPNSFQKQLQPQDQIDSVGHW 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto4g0275 198 MobiDBLite consensus disorder prediction 10 31 - -
Sto4g0275 198 ProSitePatterns NF-YB/HAP3 subunit signature. 67 83 IPR003956 GO:0005634|GO:0006355|GO:0043565
Sto4g0275 198 PRINTS CCAAT-binding transcription factor subunit A signature 64 82 - -
Sto4g0275 198 PRINTS CCAAT-binding transcription factor subunit A signature 83 101 - -
Sto4g0275 198 PRINTS CCAAT-binding transcription factor subunit A signature 102 120 - -
Sto4g0275 198 MobiDBLite consensus disorder prediction 179 198 - -
Sto4g0275 198 MobiDBLite consensus disorder prediction 1 31 - -
Sto4g0275 198 SUPERFAMILY Histone-fold 33 143 IPR009072 GO:0046982
Sto4g0275 198 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 18 188 IPR027113 GO:0001228|GO:0006355|GO:0016602
Sto4g0275 198 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 36 100 IPR003958 -
Sto4g0275 198 Gene3D Histone, subunit A 23 150 IPR009072 GO:0046982
Sto4g0275 198 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-7 18 188 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto4g0275 Sto-Chr4 2086433 2087128 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto4g0275 12 198 CCAAT-HAP3 Transcription Factor Family AT2G13570 61.321 3.19e-70 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Sto4g0275 CBFD_NFYB_HMF 1.2e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto4g0275 K08065 - cit:102611608 301.212