Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto4g0271 ATGCAACGAGATTACAAATTAAGTTCCTATTCATTGAATTCTGTGTCAGCACATTTCCTTTCTGAACAAAAAGAGGATGTTCACCATTCAATTATATCTGATCTTCAGAATGGAAATGCAGAAACTAGGAGACGCCTTGCTGTCTATTGTTTGAAGGATGCATATCTCCCTCAAAGGCTTTTGGACAAACTGATGTTCATTTACAATTATGTGGAGATGGCTCGAGTAACAGGAGTTccaatttcttttttactttcgAGAGGGCAAAGCATTAAGGTACTTTCTCAACTTCTTAGGAAGGCAAAACAGAAGAACTTGGTTATTCCTAATGTCAAACAGGCTGGGTCAGACCAAGGAACATATGAAGGTGCCACAGTATTGGAGGCAAGGGCTGGATTCTATGAAAAGCCAATTGCTACTTTAGATTTTGCGTCATTGTATCCATCTATTATGATGGCATATAATTTATGCTACTGCTCTCTGGTCACCCCTGAAGATGTTCGCAGGCTCAACCTCCCTCCAGAGTCTGTGAACAAAACTCCTTCCGGTGAAACGTTTGTTAAATCAAATTTACAGAAGGGTATACTTCCTGAAATTCTTGAAGAGTTGTTAACAGCCCGTAAAAGGGCAAAAGCTGATTTAAAGGAGGCAAAAGATCCTCTTGAGAAGGCTGTGCTAGATGGTCGACAGCTGGCCCTGAAGATTAGTGCAAATTCTGTATATGGGTTTACTGGGGCTACTGTTGGTCAATTACCATGCTTAGAGATATCTTCGAGTGTTACTAGCTACGGTCGGCAAATGATTGAGCACACCAAGAAACTCGTGGAAGATAAATTTTTGACACTAAATGGTTATGAGCACAATGCTGAGGTCATATATGGAGACACAGATTCTGTCATGGTGCAATTTGGTGTTTCTTCTGTAGAAGAGGCTATGAACTTGGGGAGAGAAGCTGCTGAGTACATAAGTGGAACATTCATAAAACCCATCAAACTAGAGTTTGAGAAGGTTTACTATCCATATCTCTTGATTAGCAAGAAGAGATATGCTGGTTTATTTTGGACAAAACCAGACAATTTTGACAAGATGGACACGAAAGGCATTGAAACAGTTCGAAGAGACAATTGTTTATTGGTAAAAAACCTGGTCAATGATTGCCTTCACAAGATACTGATTGACAGGGACATCCCTGGGGCAGTTCAGCATGTCAAGAATGCAATTTCTGATCTTCTTATGAACCGCATGGATTTGTCACTGTTGGTTATCACAAAGGGATTGACCAAGACGGGAGATGATTATGAAGTAAAAGCAGCTCATGTTGAACTTGCTGAAAGAATGCGCAAGCGAGATGCTGCTACTGCGCCTAATGTTGGTGATAGAGTACCTTATGTCATCATCAAAGCTGCAAAAGGTGCCAAGGCTTATGAGAGGTCGGAGGATCCAATCTATGTGCTAGAGAACAACATACCAATAGACCCGCAGTACTATCTGGAGAATCAAATTAGCAAGCCAATTCTAAGGATTTTTGAGCCGATTTTAAAGAATGCTAGCAAGGAACTTCTCCATGGGAGCCACACAAGATCTATATCTATTTCAACACCATCAAACAGTGGCATAATGAAATTTGCTAAGAAACAGCTTACTTGCATTGGTTGCAAAGCTTTACttagCAGGGTGGGTCAAGTTGCTGCAATGGAAATCGCACTCTCTGCTCACATTGCAAGGGAAGGGAGGCTGAGCTGTACTGCAAAACAGTTGCTCAAGGTAGGCATCTATTTAAAGTGA 1785 0.4062 MQRDYKLSSYSLNSVSAHFLSEQKEDVHHSIISDLQNGNAETRRRLAVYCLKDAYLPQRLLDKLMFIYNYVEMARVTGVPISFLLSRGQSIKVLSQLLRKAKQKNLVIPNVKQAGSDQGTYEGATVLEARAGFYEKPIATLDFASLYPSIMMAYNLCYCSLVTPEDVRRLNLPPESVNKTPSGETFVKSNLQKGILPEILEELLTARKRAKADLKEAKDPLEKAVLDGRQLALKISANSVYGFTGATVGQLPCLEISSSVTSYGRQMIEHTKKLVEDKFLTLNGYEHNAEVIYGDTDSVMVQFGVSSVEEAMNLGREAAEYISGTFIKPIKLEFEKVYYPYLLISKKRYAGLFWTKPDNFDKMDTKGIETVRRDNCLLVKNLVNDCLHKILIDRDIPGAVQHVKNAISDLLMNRMDLSLLVITKGLTKTGDDYEVKAAHVELAERMRKRDAATAPNVGDRVPYVIIKAAKGAKAYERSEDPIYVLENNIPIDPQYYLENQISKPILRIFEPILKNASKELLHGSHTRSISISTPSNSGIMKFAKKQLTCIGCKALLSRVGQVAAMEIALSAHIAREGRLSCTAKQLLKVGIYLK 594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto4g0271 594 Gene3D - 1 122 IPR036397 GO:0003676
Sto4g0271 594 ProSitePatterns DNA polymerase family B signature. 293 301 IPR017964 GO:0000166|GO:0003676
Sto4g0271 594 Pfam DNA polymerase family B 79 512 IPR006134 GO:0000166|GO:0003677
Sto4g0271 594 CDD POLBc_delta 120 513 - -
Sto4g0271 594 Gene3D Helix hairpin bin 194 246 - -
Sto4g0271 594 Gene3D Palm domain of DNA polymerase 123 350 IPR023211 -
Sto4g0271 594 SMART polmehr3 1 305 IPR006172 GO:0000166|GO:0003676|GO:0003887
Sto4g0271 594 PANTHER DNA POLYMERASE CATALYTIC SUBUNIT 1 566 - -
Sto4g0271 594 TIGRFAM pol2: DNA polymerase (pol2) 100 510 - -
Sto4g0271 594 SUPERFAMILY Ribonuclease H-like 2 109 IPR012337 -
Sto4g0271 594 PRINTS DNA-directed DNA-polymerase family B signature 138 151 IPR006172 GO:0000166|GO:0003676|GO:0003887
Sto4g0271 594 PRINTS DNA-directed DNA-polymerase family B signature 230 242 IPR006172 GO:0000166|GO:0003676|GO:0003887
Sto4g0271 594 PRINTS DNA-directed DNA-polymerase family B signature 291 299 IPR006172 GO:0000166|GO:0003676|GO:0003887
Sto4g0271 594 PANTHER DNA POLYMERASE DELTA CATALYTIC SUBUNIT 1 566 - -
Sto4g0271 594 SUPERFAMILY DNA/RNA polymerases 104 514 IPR043502 -
Sto4g0271 594 Gene3D - 367 522 IPR042087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto4g0271 Sto-Chr4 2043999 2051399 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto4g0271 1 581 Core DNA Replication Machinery Family AT5G63960 87.263 0.0 1046
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto4g0271 K02327 - gmx:548092 1075.85