Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto4g0257 ATGAAGAGTGAAATAGAGTTGCCTCCTGGCTTCAGATTCCACCCAACGGATGAAGAATTGGTGAATCACTATCTGTGTAGGAAATGTGCTTCTCAGTCCATTTCTGTTCCTATCATCAAAGAGATCGATTTGTACAAGTTCGATCCATGGCAGCTTCCAGtAGAATTAAAATGGGTGATTCATCCATCAGATTTGGCACTGTACGGTGAGAAAGAATGGTACTTCTTCTCTCCTCGGGACAGAAAATACCCAAACGGGTCCAGGCCCAACAGAGCCGCGGGAAGTGGGTATTGGAAGGCCACCGGAGCCGATAAGCCCATAGGAAAGCCCAAGCCACTCGGAATCAAGAAAGCCCTCGTTTTTTACGCCGGAAAAGCCCCCTCCGGCCACAAAACCAACTGGATCATGCACGAATATCGTCTCGCCAATGTTGATCGATCTGCTCGCAAAAACAACAACTTAAGGCTTGATGATTGGGTATTATGCCGAATTTACAACAAGAAAGGGATAATGGAGaagtacaataataataatagcaacACGAAGGTTGATTATATTGATGATCATGAAATCAAGCCACAAATCAATACGGCGGCGATGACTAATAATGACCAATTGTATATGGACACGTCGGAGTCGGTTCCGAGGTTGCATACGGAGTCGAGCAGCTCGGAGGAGCACGTGGTTTCTCCGGATGTCACGTGGGAGAGGGAGGTGCAGAGTGAGCCCAAGTGGAATGAGCTAGAATTGGGTGTAGGAGATGGTGGGTTTGGTTTTGAGTTCAATTACAATATTATGGAGGGCATGGGAGATGACCCTTTTGCCCCTGAGGTTCAGTACCAGATGAATGAGCTGTCACCATTGCAGGACATGTTCATGTATCTCCAGAAACCATATTGA 900 0.4578 MKSEIELPPGFRFHPTDEELVNHYLCRKCASQSISVPIIKEIDLYKFDPWQLPVELKWVIHPSDLALYGEKEWYFFSPRDRKYPNGSRPNRAAGSGYWKATGADKPIGKPKPLGIKKALVFYAGKAPSGHKTNWIMHEYRLANVDRSARKNNNLRLDDWVLCRIYNKKGIMEKYNNNNSNTKVDYIDDHEIKPQINTAAMTNNDQLYMDTSESVPRLHTESSSSEEHVVSPDVTWEREVQSEPKWNELELGVGDGGFGFEFNYNIMEGMGDDPFAPEVQYQMNELSPLQDMFMYLQKPY 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto4g0257 299 Gene3D NAC domain 16 172 IPR036093 GO:0003677|GO:0006355
Sto4g0257 299 PANTHER NAC TRANSCRIPTION FACTOR 56 5 266 - -
Sto4g0257 299 Pfam No apical meristem (NAM) protein 8 141 IPR003441 GO:0003677|GO:0006355
Sto4g0257 299 PANTHER NAC DOMAIN-CONTAINING PROTEIN 2-LIKE 5 266 - -
Sto4g0257 299 ProSiteProfiles NAC domain profile. 7 167 IPR003441 GO:0003677|GO:0006355
Sto4g0257 299 SUPERFAMILY NAC domain 4 167 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto4g0257 Sto-Chr4 1944844 1945915 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto4g0257 1 299 NAC Transcription Factor Family AT1G01720 62.418 1.65e-127 363
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Sto4g0257 NAM 4.5e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto4g0257 - - qlo:115973450 426.787
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto4g0257 4 1944844 1945915 Sto4g0257 4 1944844 1945915 ECH
Sto3g3240 3 37147001 37148098 Sto4g0257 4 1944844 1945915 ECH