Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto4g0201 atggagaaattgaattttgtgaaGAATGGAGTGAGCAGATTGCCTCCTGGATTTAGGTTTCAGCCAACAGATGAAGAGCTTGTGTTTGAGTACTTGAAGTGTAAGatcttctcttctcctttgCCTGCTTCCATCATCCCTCATGCCAATGTCTGCAACTACGATCCTTGGGATTTGCCAGGGAATAGTGAGGAGGAAGAGAGGTACTTTTTCAGCAACAAGGAAGCAAAATACAGAAATGGTAATCGGATGAACCGGACGACCAAGTCAGGATATTGGAAAGCCACTGGTTCGGACAAGAAGatttcatgtctaaacacacaTTATGGTAATAGTGGTTTTGGTGGACTCAGAAAAACACTGGTTTTTTACAAAGGAAAAGCTCCAAATGGCTCTAGAACTAACTGGATCATGCATGAATATCGCCTTCTCACTACACATAATTCCTCAACCCACCAGAATTATGGAAACGAGGTAGGAGATTGGGTTGTGTGTCGGATAAGTATGAAGGCGAGAACAGAGAATAACGGTGGTGACGTCAGGAAGCGAATCACGAACGATGACGTGGCAGAGCCAAGATTCTTCGATTTCATGCGGGTACACAATAGGGTAATACACGGGGCTCCACCGCATCATTTCTCCTGCACGACGTCGTCTTGTTCGAGTTCTAGTGCCATCACATTCACAGAGGAGTGTTGTTCTTCAAGTGTGGCGGATCATGAAGAAGAAACAAGTGCCTATACTTctcacttttaa 756 0.4114 MEKLNFVKNGVSRLPPGFRFQPTDEELVFEYLKCKIFSSPLPASIIPHANVCNYDPWDLPGNSEEEERYFFSNKEAKYRNGNRMNRTTKSGYWKATGSDKKISCLNTHYGNSGFGGLRKTLVFYKGKAPNGSRTNWIMHEYRLLTTHNSSTHQNYGNEVGDWVVCRISMKARTENNGGDVRKRITNDDVAEPRFFDFMRVHNRVIHGAPPHHFSCTTSSCSSSSAITFTEECCSSSVADHEEETSAYTSHF 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto4g0201 251 Pfam No apical meristem (NAM) protein 15 143 IPR003441 GO:0003677|GO:0006355
Sto4g0201 251 ProSiteProfiles NAC domain profile. 14 170 IPR003441 GO:0003677|GO:0006355
Sto4g0201 251 Gene3D NAC domain 23 174 IPR036093 GO:0003677|GO:0006355
Sto4g0201 251 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 1 251 - -
Sto4g0201 251 SUPERFAMILY NAC domain 10 170 IPR036093 GO:0003677|GO:0006355
Sto4g0201 251 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 1 251 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto4g0201 Sto-Chr4 1502683 1504352 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto4g0201 1 199 NAC Transcription Factor Family AT5G13180 55.455 9.56e-71 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Sto4g0201 NAM 3e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto4g0201 - - gmx:100527806 312.383