Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto4g0196 ATGACGACGATGCGCGACGCCGCGGGAAGGATTCCGGAGCTCAGCGACGTGGGCGGAGTGGCCTGGAGAAATCTGTTACTGATGGAGGTAATGCTGGCTCGGCGGCACACCGGCGATTTTCTCGGGAATCTTCCGGCGCCGGAGCGCCGGAAACCTAGTCTTGATCCATGCGCGAAAACGCAGCAAGGTTGGCCTTCTTGGTTGATGGCTGTGGCTGGGGACGCAATCCGAGATTGGACTCCTCGACGGGCCAACACGTTCGAGAAGATTGCGAAGATTGGACAGGGGACTTATAGTAATGTATACAAAGCGAGAGACCTTCTTACTGGGAAGATTGTGGCTTTAAAGAAAGTTAGGTTTGATAATCTGGAGCCAGAGAGTGTAAAGTTTATGGCAAGAGAGATTCTTGTTTTGAGGCGGCTTGATCACCCAAATGTCGTGAAACTCGAGGGTTTGGTTACTTCAAGAATGTCATGCAGTCTTTACTTAGTATTCGAGTATATGGAACACGATCTTGCCGGGCTTGCAGCTGGTCAAGGTGTTAAGTTCACTGAGCCTCAGGAGTTTGATGTCGTTCCTGGTGCCGTCTGGGCCGTATTGGGTCCCATGATAGCTGTCAAATGCTATATGAAACAATTGCTCTCTGGCCTTGAGCATTGCCACAGCCAAGGTGTCTTGCACCGTGATATTAAGGGTTCCAATCTTCTTATTGATGATGAAGGAATCCTTAAAATAGCAGATTTTGGACTGGCAACTTTCTATGATCCTACGCAAAAGCAGCCAATGACGAGTAGAGTTGTCACCCTTTGGTATCGACCTCCTGAGCTTCTTCTTGGGGCTACATTCTATGGTGTTGGTATTGACCTGTGGAGTGCTGGCTGCATCTTGGGAGAGCTTCTTACTGGGAAGCCAATCATGCCTGGCCGAACAGAGGTTGAACAActccacaaaatttttaaattatgtggCTCTCCATCTGACGATTACTGGAAGAAATATAGATTGCCAAATGCTACACTCTTTAAGCCACAGCAGCCATATAAACGTTGCATTTTAGAAACCTTCAAGGACTTTCCTCCATCTTCCTTACCTTTAATGGAAACTTTTCTTGCAATTGATCCTGTTGATCGTGGCACTGCCTTGGATGCTCTTAATAGTGAATTTTTCACCACAGAACCATATGCCTGTGAACCATCAAGTTTACCAAAGTACCCTCCCAGCAAGGAATTGGATGTAAAACTGAGAGATGAAGAAGCTAGAAGGCAAAAAGCACTAAATGGGAAAGCTAATGCAGTTGATGGTGCCAGAAGAGTCAGAGTACGTGAGCGTGGTCGGGCCATTCCAGCTCCAGAAGCCAATGCAGAGAGCCAAACAAACTTAGATAGGTGGAGAGTTGTGACCCATGCAAACGCCAAAAGCAAGAGTGAGAAATTCCCACCTCCTCATCAGGATGGAGCTGTTGGGTATCCATTGGGTGCATCTCAGAAGGGACCAGTTTCATTTGGTGCCACTGATGCTTCCTTTAGCTCATCAATATTTAATTCAAAACCTTCAGGGTCTGCTAGAAGTCATGGTGCTTCAGGGCCTCCTCACAGAGGCAAGAAAACCAAGAAACCAGATTCCCAATCCCAGATGGTGGCTTCATCATGGAAATTCATGCGTGCATTTAAGCCTTCTTCAGTTCATCACTAA 1692 0.4663 MTTMRDAAGRIPELSDVGGVAWRNLLLMEVMLARRHTGDFLGNLPAPERRKPSLDPCAKTQQGWPSWLMAVAGDAIRDWTPRRANTFEKIAKIGQGTYSNVYKARDLLTGKIVALKKVRFDNLEPESVKFMAREILVLRRLDHPNVVKLEGLVTSRMSCSLYLVFEYMEHDLAGLAAGQGVKFTEPQEFDVVPGAVWAVLGPMIAVKCYMKQLLSGLEHCHSQGVLHRDIKGSNLLIDDEGILKIADFGLATFYDPTQKQPMTSRVVTLWYRPPELLLGATFYGVGIDLWSAGCILGELLTGKPIMPGRTEVEQLHKIFKLCGSPSDDYWKKYRLPNATLFKPQQPYKRCILETFKDFPPSSLPLMETFLAIDPVDRGTALDALNSEFFTTEPYACEPSSLPKYPPSKELDVKLRDEEARRQKALNGKANAVDGARRVRVRERGRAIPAPEANAESQTNLDRWRVVTHANAKSKSEKFPPPHQDGAVGYPLGASQKGPVSFGATDASFSSSIFNSKPSGSARSHGASGPPHRGKKTKKPDSQSQMVASSWKFMRAFKPSSVHH 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto4g0196 563 ProSitePatterns Protein kinases ATP-binding region signature. 93 116 IPR017441 GO:0005524
Sto4g0196 563 PANTHER SERINE/THREONINE/DUAL SPECIFICITY PROTEIN KINASE, CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED 51 543 - -
Sto4g0196 563 SMART serkin_6 87 389 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sto4g0196 563 MobiDBLite consensus disorder prediction 511 551 - -
Sto4g0196 563 SUPERFAMILY Protein kinase-like (PK-like) 80 394 IPR011009 -
Sto4g0196 563 Gene3D Phosphorylase Kinase; domain 1 73 169 - -
Sto4g0196 563 MobiDBLite consensus disorder prediction 443 462 - -
Sto4g0196 563 PANTHER CELL DIVISION PROTEIN KINASE 51 543 - -
Sto4g0196 563 ProSitePatterns Serine/Threonine protein kinases active-site signature. 225 237 IPR008271 GO:0004672|GO:0006468
Sto4g0196 563 MobiDBLite consensus disorder prediction 471 491 - -
Sto4g0196 563 Gene3D Transferase(Phosphotransferase) domain 1 202 429 - -
Sto4g0196 563 ProSiteProfiles Protein kinase domain profile. 87 389 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sto4g0196 563 CDD STKc_CDK9_like 87 389 - -
Sto4g0196 563 Pfam Protein kinase domain 87 389 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto4g0196 Sto-Chr4 1466479 1469964 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto4g0196 79 529 Core Cell Cycle Gene Families AT5G10270 42.017 1.32e-110 338
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Sto4g0196 Pkinase 2.9e-62 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto4g0196 K08819 - gmx:100807756 904.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto4g0196 4 1466479 1469964 Sto4g0196 4 1466479 1469964 ECH