Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto4g0182 ATggcatcatcttcttcttcatcatcgaTCAAGAGGAATTGCGTGAGCGGGAACGCCGAAACCTACTCTTCTGCTTacaaccatcatcatcatcaccaaccTTGGAACGCCTCACACGGTGCTACTACTCCTCAGAATGCTCATTCTTCATCAGCCGCGAAAGATGCGGAAGCAGCGCTTTACAAGGAGCTATGGCATGCTTGTGCTGGTCCTCTCGTCACAGTGCCCCGGGAAGGAGACCGAGTCTTCTATTTTCCTCAGGGACATATCGAACAGGTGGAGGCGTCCACCAATCAGGTGGCGGACCAGCATATGCCTGTGTACGATCTCCCACCCAAAATCCTCTGTCGAGTGATCAACGTGCGGCTCAAGGCTGAGCCAGACACCGACGAGGTGTTTGCCCAAGTGACGTTGGTTCCGGAGCCAAATCAAGATGAGAACGCCGTGGAGAAGGAGCCCccacctcctccaccaccacgATTTCAGGTGCATTCGTTCTGTAAAACTCTGACGGCCTCTGATACGAGTACTCATGGTGGATTTTCAGTGCTGAGACGTCATGCTGATGAATGCCTTCCTCCGCTGGTTTGGTTCTTGCCTTTGCCTCCCTATTGTGCTTCGTTTCATTTTCATTGGGCTGAAATGAGAGGAGTTCTCCTTGTTGTCTGTTGTCAGGATATGTCCAAACAGCCACCTACCCAGGAGTTGGTGGCGAAGGATCTACACGGGATCCACCTGCCCAGTGCTGACTATGGTAAGGTTGCCAGTGCCTTCACTGGGGTAATGGCTGCAAAGAATTTATGTCAACCACGCAGACACTTACTGCAAAGTGGTTGGAGTGTTTTTGTCAGCTCCAAGAGGCTTGTTGCTGGTGATGCGTTTATATTCTTAAGGGGTGAGAATGGGGAACTTCGTGTTGGTGTCAGGCGTGCAATGAGACAGCAGAGTAATGTTCCATCCTCGTTGATCTCCAGTCATAGTATGCATCTAGGTGTCCTCGCAACTGCGTGGCATGCCATTTTAACAGGGACCATGTTCACTGTGTATTACAAGCCCAGGACCAGTCCTTCTGAATTTATAGTTCCATATGATCAGTACATGGAGTCTCTAAAGAATAACTATACCATAGGCATGCGGTTCGGAATGAGGTTTGAAGGTGAAGAGGCTCCAGAGCAGAGGCTCACGGGTACCATTATTGGAATTGAAGATGCTGACCCCAAAAGGTGGCCAGAATCCAAATGGAGATGCCTCAAGGTGAGGTGGGATGAAACATCTAACATAACTCGTCCTGAGAGAATTTCTCCTTGGAAAATAGAGCCCGCTCTTGCTCCTCCAGCTCTAAATCCTCTCCCAATGGCTAGGCCTAAAAGGCCTCGGTCTAATGTGGTTCCATCATCATCTAATTCCTCTGTGCTTACTCGTGACGTGTCATCTAAATTAAGTGTAGTAGACTCTTTGCCAGCAAGTGGATTTGCAAGGGTCTTGCAAGGTCAAGAATTCTCGACCTTGAGAGGCAATTTTGCAGAAAGCAACGATTCTGATACTGCTGAAAAGCACGATGTGAGGCCACCTGCAGTAGATGACAAAAAAAGTGATGCTGTTTCTACTACAGGTAGGTATGCACCGGAGAGGTGGATGTCAAATGGGAGGCATGAACCAAAATATTCGGGTTTACTTTCAGGCTTTGGGGCGAATGAAGATCATTTCCATCCATCCTTGGTTCATCAAACTGGCTCTGTGGCTAATCTTGCAAGAAAACATGTTTCAGATGATGAAGGCAGGTTTAATGTGATAACCAGTCAATGGCCTGCAACGCCTTCTAGTATGATGGGTTCTTTACAAAGTGGTGATATAACTTACCAAGCTCAAGGGAATGTAAGGTGTGGTGTATGTGGTGACTATCCTGTGCTTCATGGTCATAAAGTTGAGCATCATCATGGAAACTCGTTGATGCCACCACCTCCACCACCAACTGAATACGATAGTCCCCGTTCAAGAGACCTGATGCCCAAACCAATAATGGCAAGAACATGCGAGGCCGGGAAAGCAAAAGAAGGGGACTGTAAACTATTTGGCGTCTCACTTATCAGTAGCCCAATTACGCCAGAGCCTTCTGTATCACAAAGAAATGTGACAACTGAGCATGTTGGTCACACGCATATTACATCACACGAGCTTCATACTTCTGAAAATGATCAGAAATCCGAACAATTAAGGGGTCCAAAACTGGCAGATGATGTAGTTGATGTTGATGACCATGAGAAGCCATTACAAACATTTCAGCCTCATGTGAAAGATGTTCAAGCCAAACCTCTCATTGGTTCTGCTAGGAGTTGTACTAAAGTTCACAAGAAGGGCATTGCGCTTGGTAGGTCAGTGGACCTTACAAAGTTCAGCAACTATGGTGaattagttgcggaattagatGATCTGTTTGAATTTGGAGGTGAATTGTTGTCTCCAAAAAAGGATTGGCTTATTGTCTATACAGATAATGAAGGTGACATGATGCTTGTTGGGGATGATCCGTGGCTGGAGTTCTGTGCCATGGTTCGCAAAATGTATATCTACCCCAAAGAAGAAATTCAGAAAATGAGCCCGGGAACATTAAGTTCTAGGATTGAAGAGAACCATTTAGTCAGCGAAGGTGCAGATGCTAAAGAAGTCAAATGTCAGCTACatgatgattcgtag 2694 0.4488 MASSSSSSSIKRNCVSGNAETYSSAYNHHHHHQPWNASHGATTPQNAHSSSAAKDAEAALYKELWHACAGPLVTVPREGDRVFYFPQGHIEQVEASTNQVADQHMPVYDLPPKILCRVINVRLKAEPDTDEVFAQVTLVPEPNQDENAVEKEPPPPPPPRFQVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLVWFLPLPPYCASFHFHWAEMRGVLLVVCCQDMSKQPPTQELVAKDLHGIHLPSADYGKVASAFTGVMAAKNLCQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQSNVPSSLISSHSMHLGVLATAWHAILTGTMFTVYYKPRTSPSEFIVPYDQYMESLKNNYTIGMRFGMRFEGEEAPEQRLTGTIIGIEDADPKRWPESKWRCLKVRWDETSNITRPERISPWKIEPALAPPALNPLPMARPKRPRSNVVPSSSNSSVLTRDVSSKLSVVDSLPASGFARVLQGQEFSTLRGNFAESNDSDTAEKHDVRPPAVDDKKSDAVSTTGRYAPERWMSNGRHEPKYSGLLSGFGANEDHFHPSLVHQTGSVANLARKHVSDDEGRFNVITSQWPATPSSMMGSLQSGDITYQAQGNVRCGVCGDYPVLHGHKVEHHHGNSLMPPPPPPTEYDSPRSRDLMPKPIMARTCEAGKAKEGDCKLFGVSLISSPITPEPSVSQRNVTTEHVGHTHITSHELHTSENDQKSEQLRGPKLADDVVDVDDHEKPLQTFQPHVKDVQAKPLIGSARSCTKVHKKGIALGRSVDLTKFSNYGELVAELDDLFEFGGELLSPKKDWLIVYTDNEGDMMLVGDDPWLEFCAMVRKMYIYPKEEIQKMSPGTLSSRIEENHLVSEGADAKEVKCQLHDDS 897
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto4g0182 897 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 226 884 IPR044835 GO:0003677|GO:0006355|GO:0009725
Sto4g0182 897 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 46 195 IPR044835 GO:0003677|GO:0006355|GO:0009725
Sto4g0182 897 SMART B3_2 166 312 IPR003340 GO:0003677
Sto4g0182 897 ProSiteProfiles PB1 domain profile. 777 859 IPR000270 GO:0005515
Sto4g0182 897 Gene3D - 163 312 IPR015300 -
Sto4g0182 897 MobiDBLite consensus disorder prediction 643 668 - -
Sto4g0182 897 Gene3D - 373 443 - -
Sto4g0182 897 ProSiteProfiles B3 DNA-binding domain profile. 272 312 IPR003340 GO:0003677
Sto4g0182 897 PANTHER AUXIN RESPONSE FACTOR 2 46 195 - -
Sto4g0182 897 PANTHER AUXIN RESPONSE FACTOR 2 226 884 - -
Sto4g0182 897 MobiDBLite consensus disorder prediction 444 474 - -
Sto4g0182 897 MobiDBLite consensus disorder prediction 29 52 - -
Sto4g0182 897 CDD B3_DNA 164 310 IPR003340 GO:0003677
Sto4g0182 897 Gene3D - 773 866 - -
Sto4g0182 897 Pfam B3 DNA binding domain 166 311 IPR003340 GO:0003677
Sto4g0182 897 MobiDBLite consensus disorder prediction 511 534 - -
Sto4g0182 897 MobiDBLite consensus disorder prediction 29 54 - -
Sto4g0182 897 MobiDBLite consensus disorder prediction 460 474 - -
Sto4g0182 897 SUPERFAMILY CAD & PB1 domains 779 854 - -
Sto4g0182 897 Pfam Auxin response factor 336 418 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Sto4g0182 897 MobiDBLite consensus disorder prediction 506 536 - -
Sto4g0182 897 Pfam AUX/IAA family 775 865 IPR033389 -
Sto4g0182 897 SUPERFAMILY DNA-binding pseudobarrel domain 162 318 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto4g0182 Sto-Chr4 1346107 1350434 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto4g0182 40 890 B3 DNA Binding Superfamily AT5G62000 59.748 0.0 993
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Sto4g0182 B3 4.6e-09 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto4g0182 - - gmx:100815956 1189.48