Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto4g0180 ATGCATTTCGCAAAACTTGATGATTCGCCTATGTTCCGGCAAcagCTACAATGCTTGGAAGAAGGTGTAGATTCATTACGGATGAGATGCCATAAATTCTATAAAGGATGTCGGAAGTACACGGAAGGGCTTGGAGAGGGATATGATGGAGACATTGCTTTTGCAAGTGCCCTTGAATCTTTTGGAGGAGGGCATGGTGACCCTCTCTTTGTTTCGTTGGGAGGACCTGTTATGAACAAATTCACTATAGCTTTGAGAGAAATTGGAACATATAAAGAAGTTCTTCGGACACAGGTGGAGCACATGCTTAATGATCGGTTgcaacaaattctcaatgctGACATTCAAGATGTTAAGGAAGCACGGAAGCGTTTTGACAAAGCTTGCCTAGTATATGACCAGGCACGGGAAAAGTTTCTTTCATTGAGAAAGAGCACTAGAATTGATATTGCCTCTGTCATAGAAGAGGAATGGCACAATTCCAGAAACTTATTTGAGGAAGCCCGTTTCAATCTGGTTAGTGCTCTAAATAATGTTGAGTCCAAGAAAAGATTTGAATTTTTGGAGGCAGTCACTGGAATTATGGATGCTCATCTTAGATACTTTCAACAGGGATATCAGCTCTTGCATCAGATGGAACCTTTCATTAGCGAGGTTTTGGCTTATGCACAACAGTCAAGAGAAAGTTGCAATACAGACCAGATTTCTCTTAATGAAAAAATGGAAGAATACAAAAAGCAAATTCATCAAGAAAGTAGATTGTCCTTAAATGGTTCCCACGGTTCTCCTGGAGACTGTGTACAGCCTTTTTCTAGGATATCAAATGAAGTGGTAGATGCAGTAATGGAATCTGCTGCAAATGGAAAGGTTCAAATCATTCGACAAGGATTTCTTTCAAAACGATCATCCAATCTGAGGGGTGACTGGAAGAGAAGGTATTTTGTTCTTGATAGTCGAGGAATGCTGTTCTATTATCGCAAACCATGGAACTGGTCATATAATGGAAATCCACCATCTGTACAGAGGAATAATGCCACTGAAAATGGTTCTGGGCTTCTGAGCCGGTGGCTTTCTTCTCATTATCATGGGGGTGTTCATGATGAAAGATCTGTAGCACGCCATGCAGTGAACCTGCTTACGTCAACAATTAAGGTTGATGCTGATCAGTCAGATTTAAGATTTTGCTTCAGGATTATTTCCCCAGTAAAGAACTATACATTGCAGGCAGAAAATACGGTGGACCAGATGGATTGGATCGAAAAGATGACAGGAGTAATTGCGTCCTTGTTGAGTGGACAGCCTCTCACAGATGACTCTGAAAGTGGTGACTGTCATTTCTCCGGCCAGATTGATATGTTAGAAAGTCCTAAAGATGATAATCAGGCAGTGAGTAAGAGTGCAAAAAGTGAAAAACCAATTGATGTTCTTAGAGGGGTAAGTGGGAATGACAGATGTGCTGATTGTGGCAAACCTGAACCGGACTGGGCATCCTTAAACCTTGGAATTCTTATATGCATTGAGTGTTCTGGAATTCATCGCAATCTTGGTGTACATATATCAAAAGTAAGATCACTGACACTTGATGTGAAAGTCTGGGACCCTTCTGTCTTAACCATGTTTCAGTCACTGGGCAATCGCTTTGCAAACTCAATTTGGGAAGAGCAGTTGCATTCAAGAAGTAATATACAAGCTGATGGTATACCTGCTGGTTCATCCAACATCAACAGAAACAAGTTATTTCATGCGAGGAAACCAGAACATGATGATCCTATTTCTTTAAAAGAGAGGTACATTCACGCAAAGTATGCTGAGAAAGTCTTTGTTCTCCAGATAAAAGATAACAAGCATCTCCTTTCAGTGGCACAACAGTTGTGGGAAAGCGTCTGTGCCAATGACAAAAAATCAGTGTACCAGTATATTGTGAAGTCCAATTTGGATGTCAATGCTGTTAGTGGGCAAGAATATTATGGTGACGCTTTTGACATGCCTTCTTCTTCAAGTAATTCGAAATCTTCATCTAAAGGTGAAAATAAGCCAATAGAAGACATACTAGACGGTTCTACTTCTGGTGTTCTTCACCTTGCATGCCTAACTGCTGACATTGGCATGGTGGAGCTGCTCTTACAATATGGTGCAGATGTAAATGCCTCTGATTCAAGAGGTCGCACACCACTGCATTACTGTATTATCAAAGGAAACACTCCAGCTGCGAAATTGCTTCTTATGAGGTAA 2232 0.405 MHFAKLDDSPMFRQQLQCLEEGVDSLRMRCHKFYKGCRKYTEGLGEGYDGDIAFASALESFGGGHGDPLFVSLGGPVMNKFTIALREIGTYKEVLRTQVEHMLNDRLQQILNADIQDVKEARKRFDKACLVYDQAREKFLSLRKSTRIDIASVIEEEWHNSRNLFEEARFNLVSALNNVESKKRFEFLEAVTGIMDAHLRYFQQGYQLLHQMEPFISEVLAYAQQSRESCNTDQISLNEKMEEYKKQIHQESRLSLNGSHGSPGDCVQPFSRISNEVVDAVMESAANGKVQIIRQGFLSKRSSNLRGDWKRRYFVLDSRGMLFYYRKPWNWSYNGNPPSVQRNNATENGSGLLSRWLSSHYHGGVHDERSVARHAVNLLTSTIKVDADQSDLRFCFRIISPVKNYTLQAENTVDQMDWIEKMTGVIASLLSGQPLTDDSESGDCHFSGQIDMLESPKDDNQAVSKSAKSEKPIDVLRGVSGNDRCADCGKPEPDWASLNLGILICIECSGIHRNLGVHISKVRSLTLDVKVWDPSVLTMFQSLGNRFANSIWEEQLHSRSNIQADGIPAGSSNINRNKLFHARKPEHDDPISLKERYIHAKYAEKVFVLQIKDNKHLLSVAQQLWESVCANDKKSVYQYIVKSNLDVNAVSGQEYYGDAFDMPSSSSNSKSSSKGENKPIEDILDGSTSGVLHLACLTADIGMVELLLQYGADVNASDSRGRTPLHYCIIKGNTPAAKLLLMR 743
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto4g0180 743 SUPERFAMILY ArfGap/RecO-like zinc finger 470 609 IPR037278 -
Sto4g0180 743 ProSiteProfiles Ankyrin repeat region circular profile. 720 743 - -
Sto4g0180 743 CDD BAR_SFC_plant 15 215 IPR035670 -
Sto4g0180 743 ProSiteProfiles PH domain profile. 291 427 IPR001849 -
Sto4g0180 743 Gene3D Arf GTPase activating protein 452 612 IPR038508 -
Sto4g0180 743 SMART PH_update 292 429 IPR001849 -
Sto4g0180 743 Gene3D Arfaptin homology (AH) domain/BAR domain 4 251 IPR027267 -
Sto4g0180 743 SMART 5bar 2 218 IPR004148 GO:0005515|GO:0005737
Sto4g0180 743 PANTHER CENTAURIN/ARF 453 743 IPR045258 GO:0005096
Sto4g0180 743 PANTHER CENTAURIN/ARF 1 435 IPR045258 GO:0005096
Sto4g0180 743 Pfam PH domain 293 423 IPR001849 -
Sto4g0180 743 ProSiteProfiles Ankyrin repeat profile. 692 719 IPR002110 GO:0005515
Sto4g0180 743 ProSiteProfiles ARF GTPase-activating proteins domain profile. 470 615 IPR001164 GO:0005096
Sto4g0180 743 Gene3D - 613 743 IPR036770 -
Sto4g0180 743 SUPERFAMILY Ankyrin repeat 628 741 IPR036770 -
Sto4g0180 743 Pfam Putative GTPase activating protein for Arf 474 607 IPR001164 GO:0005096
Sto4g0180 743 SUPERFAMILY BAR/IMD domain-like 6 314 IPR027267 -
Sto4g0180 743 MobiDBLite consensus disorder prediction 661 680 - -
Sto4g0180 743 Pfam BAR domain of APPL family 6 231 - -
Sto4g0180 743 CDD PH_ACAP 294 431 - -
Sto4g0180 743 Pfam Ankyrin repeats (many copies) 689 741 IPR002110 GO:0005515
Sto4g0180 743 PRINTS HIV Rev interacting protein signature 482 501 IPR001164 GO:0005096
Sto4g0180 743 PRINTS HIV Rev interacting protein signature 501 518 IPR001164 GO:0005096
Sto4g0180 743 PRINTS HIV Rev interacting protein signature 524 545 IPR001164 GO:0005096
Sto4g0180 743 Gene3D - 284 441 IPR011993 -
Sto4g0180 743 SMART arf_gap_3 470 615 IPR001164 GO:0005096
Sto4g0180 743 SUPERFAMILY PH domain-like 204 426 - -
Sto4g0180 743 Coils Coil 104 124 - -
Sto4g0180 743 CDD ArfGap 473 602 - -
Sto4g0180 743 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD1 1 435 - -
Sto4g0180 743 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD1 453 743 - -
Sto4g0180 743 ProSiteProfiles Ankyrin repeat profile. 720 743 IPR002110 GO:0005515
Sto4g0180 743 ProSiteProfiles Ankyrin repeat region circular profile. 692 718 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto4g0180 Sto-Chr4 1326656 1338239 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto4g0180 462 608 C2H2 Transcription Factor Family AT4G21160 39.189 1.20e-20 92.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto4g0180 K12489 - gmx:100792517 1049.27
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto4g0180 4 1326656 1338239 Sto4g0180 4 1326656 1338239 ECH