Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto4g0176 ATGGCACCACAATCCGAGAAGCCATGTGAGGACGCTAATGCTAATTCTAATGCTCCTGCTGCTCCAGTTGAAACTCACGACACAGAGGTTGATGTCCGAACCAAAGCCACAAGACACCCTCGATGGAGCAGACAGGAAACGATCATCCTCATAGAGGCAAAGAAGGTGGTCGAGAATGGTGGGACCCCGGTTTGTCGTTTGGCTCAGTCCGAACCCAAGTGGGATTTGGTGTCATCGATGTGCCGGAAACAGGGTGTGAACAGGGGACCGGTTCAGTGTAGGAAGAGATGGAGCAATCTGCTTAGCGACTTCAAGAAGATTAAGAAGTGGGATTCGGGGGTAAAGGAAGAAGAGGAAGAAACCATTGAGACTATCACTTCTAGGAAGAAAGTCATTGATCCATTGAATGTGTCAAAGCCTCCCACTCATCCCATGCCTAGTTCAGTACGTGAAAAAGCCCCGCATTCACTTCCATTGAAATCTCAAGTAAATCACATAGGTTCAGGCAAAAGAATAGGGCCTATGTCCCAAGAGGGGTCCAAGAGAAGGCGAGTGACTGAAGACACTTGTGTGGAGGACACCACAAATTTCAACAATTCCTATATGAAAGCACTGAGGAGGAATAGCAACATACTGAAAACCCAtcttggagatcaaaacaaaaactacCAACTGGCTAGGGATCAGCAGAAGGAACAAACTGGAAACTTAGTGGCTGCACTTGGGAGGCTCACAGATGCTCTGACAAAAATTGCTGAAAAGCTATAA 768 0.4583 MAPQSEKPCEDANANSNAPAAPVETHDTEVDVRTKATRHPRWSRQETIILIEAKKVVENGGTPVCRLAQSEPKWDLVSSMCRKQGVNRGPVQCRKRWSNLLSDFKKIKKWDSGVKEEEEETIETITSRKKVIDPLNVSKPPTHPMPSSVREKAPHSLPLKSQVNHIGSGKRIGPMSQEGSKRRRVTEDTCVEDTTNFNNSYMKALRRNSNILKTHLGDQNKNYQLARDQQKEQTGNLVAALGRLTDALTKIAEKL 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto4g0176 255 Pfam Myb/SANT-like DNA-binding domain 40 115 IPR044822 -
Sto4g0176 255 Gene3D - 42 106 - -
Sto4g0176 255 ProSiteProfiles Myb-like domain profile. 34 101 IPR001005 -
Sto4g0176 255 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASR3 24 119 - -
Sto4g0176 255 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASR3 128 255 - -
Sto4g0176 255 MobiDBLite consensus disorder prediction 134 187 - -
Sto4g0176 255 SMART sant 38 103 IPR001005 -
Sto4g0176 255 Coils Coil 241 255 - -
Sto4g0176 255 SUPERFAMILY Homeodomain-like 38 103 IPR009057 -
Sto4g0176 255 MobiDBLite consensus disorder prediction 1 39 - -
Sto4g0176 255 PANTHER MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN 128 255 - -
Sto4g0176 255 PANTHER MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN 24 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto4g0176 Sto-Chr4 1309654 1311421 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto4g0176 31 150 Trihelix Transcription Factor Family AT1G13450 31.200 1.05e-07 49.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Sto4g0176 Myb_DNA-bind_4 2.7e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto4g0176 - - cic:CICLE_v10033491mg 150.599