Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto4g0172 ATGCTCTGGACCGCTTCTGAGATTCAAAGTTTTGTTTTCTGTTTGTTCTCGAGTTTTTCAGATGAGCTGTTGCTGAATTTCTGTGGAGGAACCGGAGGAGAAAGGATTTTTGTTTTGGATTTTGCGTACCGGAGAGTTGATGTCAAGGAACAGTGCGTAGCAAAGACAGCAAGTGAGGAGCTTTTCGGTAATTGTTCACTTCGAGAGTTTTGGACTCTGAGCTACAGGATGCCTTTTGAAATAATGGATCAGAGGGGCCTATCCGCCTCACCTCACATTTTTGATGACAATTGCTTCCATTCTGAGAAGAATGTTGGATTGCCAAAGCCAAAATTCTTACATGACCATTATTTACATGGGAAAGTAGGAGCATCACCTCGCAGCACTATGAATACTTCATCACCTCTAGAAATGAGTGCAAAGTCAGGCTTGCCAATGTCACAGACAAATCTCTCTGGAGAAGTTACAGAAAAGCTACATGTTGGCAGGGGAGGCATTGTTGATGTGTTGAAGTCTACAAAGGAATCAATGAATCATCAACCCAGATCTTGGTCTAATGCGTTTATGCAACCAGAATCTACCTCTTATGGTGGTATTATTAGGAACGAGATTGTCACTGATACTGCTTCTCATGAAAGCAGTCTATTCTCTAGCTCCTTGTCTGAGATATTTAGCCGAAAAATGAGGTTAGCAAGGAATGATGTTCTGTCTCATCAGCCTGTTACCATTGGTTCCCTTCCAGAGGAGGAACCATTTAAATCTCTTAAAGAAATTGAGGCTGACACTATTGGGAATCTCCTTCCTGATGAAGATGATCTGTTTTCTGGAGTCACTGATGAGTTAGGAAACAATTCTCATGCCAAAACAAGCGATGACTTTGAAGAGTTTGATTTGTTTAGCAGTGGTGGAGGCATGGAGCTGGAAGGAGATGAACATCTAAGTTTGGGAAAAAGAATCAATGGTCTGGATGTAGATTCCGGATATTTGGGAGGTTTTAAAGGAAAACTTCCTTTTGGTGAACAACCTTCCAGAACACTTTTTGTCAGAAATATTAATAGCAATGTTGAAGATTCTGAGCTAAAGGCTCTTTTTGAGCAATATGGAGACATCCGAACCATTTATACAGCCTGCAAGCATCGTGGGTTTGTGATGATTTCTTATTATGATCTAAGGGCAGCACAAAATGCAATGCAAGCACTTCAAAATAGGTCATTGAGGTCTAGGAAACTTGACATACATTATTCAATTCCAAAGGGAAATGCTCCAGAAAAGGATATAAGCCATGGTACATTGGCGCTATCTGGTCTTGATTCTTCTGTTTCAAATGATGAGCTTCAACAGATCTTTGGATTTTATGGAGAAATAAAAGAAATCTATGAATCTCCAGAAGTGAATTATCaaaaatttattgaattttATGATGTGCGAGCTGCAGAAGCTGCTCTTCGTGCATTAAACAGGAGTGACATTGCTGGGAAGCAGATCAAGCTTGAACCTGGGCATCCTAGGGGCACAAGTTTGACGCAGCAGTCTCACAAGGGGCAAGATGAACCTGACTTTGGTCAAAGTCTCTGTGACAACTTATCACTAAGACACAAGGCAACAATGTCTTCTGGAATAATTGCATCTGGCTGCCTAGAAAATGGATCTAGTCCAGGATTTCACTCTGCAATACAGCAACCTATGAACACATTAATTGATAATGCGTTCTCCCCTGTGAATTCTAGCATTCACAAAGCAGTGAGAGGACCATCTTCTGCAAAAGTTCCTGGTGTTTGCGAGTCCAATAACTTTCTTGATGCAATGAAATTTGCTTCTGTTCCCAGATTCCATCCTCATTCCTTACCTGATTATCATGATAGTTTAGCTAATGGCAGTGCTTACAACTTTTCAAGCATAGTTGGCAATGTGACTGGCAACATTGGTACCGGAATGGCGGAAGGCTCAGATAGCAGGCACATTCAGGGAATGGGTTCAACtggtaatttgatggaatttaatGGAGTAGGAAATGGGAGCCACCCACGTCATGGACTTTATAATGTATGGAACGGCTCCAATTTGCATCAGGAACCTTCACCAAATCCCATGATTTGGCAGAAAACACCATTTGTTAATGGCGCCTGTGCTCCTTGCCTTCCGCAAATGGCCAACTTTCCGAGAACGCAGTCTCATATGCTGAGAGCATCACATATAGACCATCATGTTGGGTCAGCACCAGTTGTAGCCTCCCCCTGGGATAGGCAGCATTCTTATCTAGGCGTGTCTCCTGAAGCTTCTGGTTTTCGCATGGGTTCTCTAGGAAGTGCAGGTTTACCTGGTAGCTGGCAATTGCATCCTCCGGAATTTTCCTCTCACAACATGTTTTCTCATATTGGTGGGAATGGCGTGGAGTTGACATCTAATGCTGGGCAGAGCTCTCCTAAGCAGTTGTCACATGTTTTCCCTGGGAGACATCCCCTGACATCAATGTCAAAATTCGATTCCAATGAACGAATGAGAAATCTGTATTCCTCTCGGAAAAGCGAAGCTAACTCTAACAGTGCTGATAAAAAGCAATATGAACTTGATCTAGGCTGCATCTTGCGTGGGGAAGACAACCGAACAACTctcatgataaaaaatattccCAACAAGTATACTTCAAAGATGCTTCTGGCTGCTATAGATGAGCAATGTCGGGGAACATatgattttctttatttgccAATTGACTTCAAGGCAAGCATTTATTTATGCAGTTGCCAGTTAAACAAATGCAATGTTGGCTACGCATTTATTAATATGATAGATCCTGCTCAGATTATTCCATTCCACCAGGCTTTTAATGGGAAAAAATGGGAGAAATTCAACAGTGAAAAGGTAGCCTCGCTTGCATATGCCCGAATTCAGGGAAAAGCTGCTCTTATTGCTCATTTCCAGAATTCAAGCTTGATGAATGAAGATAAACGTTGTCGCCCTATTCTGTTCCACACTGATGGTCCAAATGCTGGTGATCCGGAGCCCTTCCCGATGGGTACTAATATTAGAATGAGACCTGGAAAATCTCGCACTTCGGGTACCGAGGAGCATCGCAGCCAGGGGATTCCTTCAACTTTGGCAAATGGAGAGGGGTCTACTAATGCAATAATTGATTCTTCATTGAACTCTTCAAGGAGTTCTTCTGACTGA 3171 0.4166 MLWTASEIQSFVFCLFSSFSDELLLNFCGGTGGERIFVLDFAYRRVDVKEQCVAKTASEELFGNCSLREFWTLSYRMPFEIMDQRGLSASPHIFDDNCFHSEKNVGLPKPKFLHDHYLHGKVGASPRSTMNTSSPLEMSAKSGLPMSQTNLSGEVTEKLHVGRGGIVDVLKSTKESMNHQPRSWSNAFMQPESTSYGGIIRNEIVTDTASHESSLFSSSLSEIFSRKMRLARNDVLSHQPVTIGSLPEEEPFKSLKEIEADTIGNLLPDEDDLFSGVTDELGNNSHAKTSDDFEEFDLFSSGGGMELEGDEHLSLGKRINGLDVDSGYLGGFKGKLPFGEQPSRTLFVRNINSNVEDSELKALFEQYGDIRTIYTACKHRGFVMISYYDLRAAQNAMQALQNRSLRSRKLDIHYSIPKGNAPEKDISHGTLALSGLDSSVSNDELQQIFGFYGEIKEIYESPEVNYQKFIEFYDVRAAEAALRALNRSDIAGKQIKLEPGHPRGTSLTQQSHKGQDEPDFGQSLCDNLSLRHKATMSSGIIASGCLENGSSPGFHSAIQQPMNTLIDNAFSPVNSSIHKAVRGPSSAKVPGVCESNNFLDAMKFASVPRFHPHSLPDYHDSLANGSAYNFSSIVGNVTGNIGTGMAEGSDSRHIQGMGSTGNLMEFNGVGNGSHPRHGLYNVWNGSNLHQEPSPNPMIWQKTPFVNGACAPCLPQMANFPRTQSHMLRASHIDHHVGSAPVVASPWDRQHSYLGVSPEASGFRMGSLGSAGLPGSWQLHPPEFSSHNMFSHIGGNGVELTSNAGQSSPKQLSHVFPGRHPLTSMSKFDSNERMRNLYSSRKSEANSNSADKKQYELDLGCILRGEDNRTTLMIKNIPNKYTSKMLLAAIDEQCRGTYDFLYLPIDFKASIYLCSCQLNKCNVGYAFINMIDPAQIIPFHQAFNGKKWEKFNSEKVASLAYARIQGKAALIAHFQNSSLMNEDKRCRPILFHTDGPNAGDPEPFPMGTNIRMRPGKSRTSGTEEHRSQGIPSTLANGEGSTNAIIDSSLNSSRSSSD 1056
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto4g0172 1056 MobiDBLite consensus disorder prediction 503 517 - -
Sto4g0172 1056 CDD RRM3_MEI2_like 871 966 IPR034454 -
Sto4g0172 1056 Pfam RNA recognition motif 2 868 974 IPR007201 -
Sto4g0172 1056 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 346 410 IPR000504 GO:0003723
Sto4g0172 1056 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 433 496 IPR000504 GO:0003723
Sto4g0172 1056 MobiDBLite consensus disorder prediction 992 1056 - -
Sto4g0172 1056 SMART rrm1_1 345 413 IPR000504 GO:0003723
Sto4g0172 1056 SMART rrm1_1 430 498 IPR000504 GO:0003723
Sto4g0172 1056 SUPERFAMILY RNA-binding domain, RBD 341 503 IPR035979 GO:0003676
Sto4g0172 1056 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 344 417 IPR000504 GO:0003723
Sto4g0172 1056 MobiDBLite consensus disorder prediction 124 146 - -
Sto4g0172 1056 SUPERFAMILY RNA-binding domain, RBD 870 965 IPR035979 GO:0003676
Sto4g0172 1056 MobiDBLite consensus disorder prediction 1023 1056 - -
Sto4g0172 1056 Gene3D - 338 426 IPR012677 -
Sto4g0172 1056 Gene3D - 427 521 IPR012677 -
Sto4g0172 1056 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 429 502 IPR000504 GO:0003723
Sto4g0172 1056 PANTHER RNA RECOGNITION MOTIF 2, NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 78 1050 - -
Sto4g0172 1056 MobiDBLite consensus disorder prediction 493 522 - -
Sto4g0172 1056 PANTHER RNA RECOGNITION MOTIF-CONTAINING 78 1050 - -
Sto4g0172 1056 CDD RRM1_MEI2_like 343 418 IPR034453 -
Sto4g0172 1056 MobiDBLite consensus disorder prediction 125 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto4g0172 Sto-Chr4 1282267 1289137 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto4g0172 339 518 Eukaryotic Initiation Factors Gene Family AT3G16380 23.881 1.78e-08 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto4g0172 - - gmx:100797616 1373.99