Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto4g0168 ATGGATCCCGACGCACTCACCGCCACCATATTCAAGTGGGACCCCCGCACCGTCCTCCCCCCCATCACGCGCCCCTCCTCCCTCCTCCTCGACTTCTCCGCCCCTCCGCCGGattccgccgccgccgccgtctCCGTGTGTCCGCCCACCAGGGGGCTGGAGGAGCTCTTCCACGCCTACGGAATCAGATACTTGACGGTTTCCAAGATAGCGGAGTTAGGGTTCACGGCCAGCACGCTGGTGGACATGAAGGACCAAGAGCTGGACGACATGATGAACAGCCTCTCCCACATTTTCCGGTGGGATCTGCTCGTCGGCGAGCGATACGGAATCAAAGCCGCCGTCAGAGCTGAGCGGCGCCGCCTCGATGATAACGACGACGTCAGGCGCCGTAGCCTCGTCTCCACCAACGCACTCGACGCTCTATCTCAGGAAGAAGTGTACTGTGAGAGGCAAAGAGAGCACCCATTTATAGTGACGGAGCCAGGAGAGGTGGCACGTGGCAAGAAGAACGGCCTCGATTATCTCTTCCACCTCTACGATCAATGCCGCCACTTCTTGATCCAAGTTCAAACCATCGCCAAGAACCGTGGCGACAAATGCCCCACCAAGGTGACGAACCAGGTGTTTAGGTACGCGAAGAAGGCAGGAGCGAGTTACATAAACAAGCCGAAGATGAGACATTATGTGCACTGCTACGCATTGCACTGTCTGGACGAGCAAGTGTCGAATGAACTGAGAAGGGTATTTAAGGAAAGAGGGGAGAATGTTGGGGTTTGGAGGCAAGCTTGCTATAAGCCTCTCGTAGCCATTGCTGCTCCTCAAGCTTGGGACATCGATGCCATTTTCAATGCCCATCCTCGTCTTTCCATTTGGTATGTCCCCACCAAGCTCCGTCAGCTTTGTCACGCCGCCCGGAACGCCGCCGCCGGCGGTAGTGGTAGTGGTAGTGGTGGTCAACTCCCTTTCTGA 972 0.5566 MDPDALTATIFKWDPRTVLPPITRPSSLLLDFSAPPPDSAAAAVSVCPPTRGLEELFHAYGIRYLTVSKIAELGFTASTLVDMKDQELDDMMNSLSHIFRWDLLVGERYGIKAAVRAERRRLDDNDDVRRRSLVSTNALDALSQEEVYCERQREHPFIVTEPGEVARGKKNGLDYLFHLYDQCRHFLIQVQTIAKNRGDKCPTKVTNQVFRYAKKAGASYINKPKMRHYVHCYALHCLDEQVSNELRRVFKERGENVGVWRQACYKPLVAIAAPQAWDIDAIFNAHPRLSIWYVPTKLRQLCHAARNAAAGGSGSGSGGQLPF 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto4g0168 323 Pfam Floricaula / Leafy protein SAM domain 50 126 IPR035079 -
Sto4g0168 323 Gene3D Protein LEAFY 147 315 IPR038276 -
Sto4g0168 323 Pfam DNA Binding Domain (C-terminal) Leafy/Floricaula 149 310 IPR035209 GO:0003677
Sto4g0168 323 PANTHER PROTEIN LEAFY 148 317 IPR002910 GO:0003677|GO:0006355
Sto4g0168 323 PANTHER PROTEIN LEAFY 1 145 IPR002910 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto4g0168 Sto-Chr4 1254981 1256780 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto4g0168 150 319 Orphan Transcription Factor Family AT5G61850 79.235 1.10e-104 311
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LFY Sto4g0168 C_LFY_FLO 5.7e-104 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto4g0168 - - gmx:100799720 471.085