Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto4g0141 ATGGTGATGACTGAGCATATCCATGCTGTGTCTTGGAAAGTTGAAACAACACCACACAAAATCCATTTCAACGGTTTTGGTTTTCATGTGAAAGATGAAGGAGCGTTACAGAATATAGAAACAATTGAGAATAGTAATAACAATGGGGGAAGCAGATTTGGAATAGTGAAGAGAAGAAGCAGCGAAGGGGAGTTTTGTGTTGATTTGAAGCTGGGGCATCACGATGAGGTGGAGAAATtagatggtggtggtggagtgTCGAAAACGAAAACGACGTCGGCGTCGGGAGGTTCGTGGAAGAGAGCTCGAGGAATGAGCAACGGAGGAGGGCAGAGGGCGTCGTGTCTGGTGGATGGGTGCAATTCAGATCTGAGTAACGGAAGGGAGTACCATAGGCGTCACAAGGTCTGCGAGCTCCATTCCAAGACTCCCGTCGTCACCATTTCTGGCCACAACCAAAGGTTCCATTCGTTGGAGGAATTTGATGAAGGAAAGAGAAGCTGTAGGAAGCGTCTAGATGGGCACAACCGACGCAGAAGAAAGCCTCAGCCACTACTTCCTCTCACCCCTTCATCCGCACCAACTCCCACTTTCTTCTCCAATTACCAAGGCCTCACTCTTCACGATCATGATCACTCTGTGGACACTTCTACTGTTATGGATCTGCAGGTTAACAGTAATAATGGGAATGGGACCTCCTCCATCTATATGCCTAATGCCCCTCACTCCCACCTTCCCTTTCATTGGGATAATTAG 756 0.4643 MVMTEHIHAVSWKVETTPHKIHFNGFGFHVKDEGALQNIETIENSNNNGGSRFGIVKRRSSEGEFCVDLKLGHHDEVEKLDGGGGVSKTKTTSASGGSWKRARGMSNGGGQRASCLVDGCNSDLSNGREYHRRHKVCELHSKTPVVTISGHNQRFHSLEEFDEGKRSCRKRLDGHNRRRRKPQPLLPLTPSSAPTPTFFSNYQGLTLHDHDHSVDTSTVMDLQVNSNNGNGTSSIYMPNAPHSHLPFHWDN 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto4g0141 251 MobiDBLite consensus disorder prediction 81 110 - -
Sto4g0141 251 Gene3D - 105 169 IPR036893 GO:0003677|GO:0005634
Sto4g0141 251 MobiDBLite consensus disorder prediction 169 197 - -
Sto4g0141 251 Pfam SBP domain 115 181 IPR004333 GO:0003677
Sto4g0141 251 ProSiteProfiles Zinc finger SBP-type profile. 112 182 IPR004333 GO:0003677
Sto4g0141 251 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 13A ISOFORM X1 32 218 - -
Sto4g0141 251 MobiDBLite consensus disorder prediction 86 100 - -
Sto4g0141 251 SUPERFAMILY SBT domain 114 184 IPR036893 GO:0003677|GO:0005634
Sto4g0141 251 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 32 218 IPR044817 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto4g0141 Sto-Chr4 1081709 1088354 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto4g0141 61 237 SBP-box Gene Family AT5G50670 45.960 2.34e-40 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Sto4g0141 SBP 1.3e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto4g0141 - - cam:101507938 160.229
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto4g0141 4 1081709 1088354 Sto4g0141 4 1081709 1088354 ECH