Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto4g0134 ATGAAGAAGGCCTATGAGCTCTCCATCTTATGCGACGCTGAGATTGCTCTTGTCGTCTTCTCTTCCTCTGGAAAGCTTTACAATTTTGCTACCCACGATATGCACCGGACTATCTCCAAGTATCGTTCTCAATTGGGACTACCCCACTCAAATATCTATACCTTCAGAACCATGGAGACGTGGAAGAGTGAATTAGATGAGCTACGGAGATCCATTGGCAACTTGGAAGACACAGTCAAGCATTTAGGAGGAGAGGATCTGTCAGCATTAGGCATGAAAGAATTGAAACAACTGGAACGACAATTGAAGACTGGGCTTCAGCGTATCCACTCTAAGAAggtacatatatgtatacaaaTACAATACATTTACATATTAATGGGGCATCACTGGACTAGTCGGATCCCTCTAACCGACCGTCCAGCCATCACTCATCCCGTTACACAGTACCATCACGCTACTTGA 465 0.4323 MKKAYELSILCDAEIALVVFSSSGKLYNFATHDMHRTISKYRSQLGLPHSNIYTFRTMETWKSELDELRRSIGNLEDTVKHLGGEDLSALGMKELKQLERQLKTGLQRIHSKKVHICIQIQYIYILMGHHWTSRIPLTDRPAITHPVTQYHHAT 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto4g0134 154 ProSiteProfiles MADS-box domain profile. 1 33 IPR002100 GO:0003677|GO:0046983
Sto4g0134 154 Pfam K-box region 58 118 IPR002487 GO:0003700|GO:0005634|GO:0006355
Sto4g0134 154 Gene3D - 1 59 IPR036879 GO:0003677|GO:0046983
Sto4g0134 154 SUPERFAMILY SRF-like 1 54 IPR036879 GO:0003677|GO:0046983
Sto4g0134 154 ProSiteProfiles K-box domain profile. 58 154 IPR002487 GO:0003700|GO:0005634|GO:0006355
Sto4g0134 154 Coils Coil 58 85 - -
Sto4g0134 154 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 118 - -
Sto4g0134 154 SMART madsneu2 1 32 IPR002100 GO:0003677|GO:0046983
Sto4g0134 154 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 1 29 IPR002100 GO:0003677|GO:0046983
Sto4g0134 154 PANTHER - 1 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto4g0134 Sto-Chr4 1052459 1053466 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto4g0134 1 123 MADS-box Gene Family AT3G58780 40.945 6.47e-27 99.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Sto4g0134 K-box 1.7e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto4g0134 K09264 - tcc:18605122 156.762