Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto4g0107 ATGGCTACTTGCGCATCTCTTTCACTTTGCTCCTACAGCTTGTATCGGCAACGCTCATACCCAAGAATGCCTTCCATTTTCTGCTCGGTTGGCTCTTCTGTAGCCGTAGGTACAGATGGATCTAAAGTGCCTGGCAAAAGATCAAGAAGAACTGAAGGGCCCAGAAGAAGCATGGAAGACTCTGTTCAACGCAAGATGGAGCAATTTTACGAAGGATCTGATGGGCCACCCCTACGGGTTCTTCCTATTGGTGGGTTGGGTGAAATTGGAATGAATTGCATGCTTGTTGGGAACTATGATCGCTATATTCTCATTGATGCTGGTGTCATGTTTCCAGACTACGACGAGCTTGGAGTCCAAAAGATCATACCTGATACAACATTTATACGAAAATGGAGCCACAAAATTGAGGCAGTTGTTATAACACACGGTCATGAGGATCATATTGGTGCACTGCCTTGGGTTATCCCAGCATTGGATTCCCATACGCCAATTTTTGCATCTTCCTTTACAATGGAGCTAATTAAGAAGCGATTGAAAGAGTATGGAATTTTTCTTCCTTCAAGACTCAAAACATTTAGCACAAGGAAGAGGTTTATGGCAGGGCCATTTGAAATAGAGCCTATCAGGGTGACCCATTCTATTCCTGATTGTTGTGGTTTAGTTCTTCGCTGTTCTGATGGTACTATTCTTCATACTGGGGACTGGAAGATTGATGAAACACCGTTGGATGGGAAGGTTTTTGACCGTGAAGCTTTAGAGGATCTCTCTAAAGAAGGAGTGACGTTGATGATGAGTGATTCAACAAATGTACTCTCACCTGGGAGGACAACCAGTGAATCCGTTGTGGCAGATGCACTACTGAGGCATATTTCAGCATCTAAAGGAAGGGTTATTACTACCCAATTTGCATCAAATATACATCGCCTTGGAAGTGTGAAAGCTGCTGCTGATTTAACTGGAAGAAAGCTTGTATTTGTTGGCATGTCTTTAAGGACATATTTGGATGCAGCTTGGAAGGATGGACAGGCACCAATTGATCCATCCACGCTGGTGAAAGTGGAGGATATTGATGCATATGCTCCAAAGGATCTGCTAATTGTAACAACTGGTTCTCAAGCAGAACCACGCGCTGCCTTGAATCTTGCGTCTTATGGAAGCAGTCATTTTTTCAAACTGACCAAGGAAGATGTAATTTTGTATTCAGCTAAGGTTATTCCTGGTAATGAGTCTCGTGTGATGAAAATGCTAAATCGCATATCTGAGATTGGATCAACAATAGTTATGGGGAAGAATGAAAGGCTGCACACATCTGGTCATGGGTATCGAGGAGAATTGGAAGAATGGGAAGGGGGGAGAGGTTTGGGAAAAAGTTCTGGGAGAGTGGCTAGCCTCTCGAATGCTAGCTGTGGGAGTCTCATTCTGGGTTCTTCTGGAGAAGAAGTGCTTAGAATAGTGAAACCACAACATTTTCTTCCCATACATGGGGAGCTCTTGTTCCTGAAGGAGCATGAGTTGCTTGGAAAATCATCCGGCATTCGACACACTGCTGTTATTAAGAATGGAGAAATGCTTGGTGTTTCACATTTGAGAAATAGAAGAGTCCTTTCTAATGGTTTCGTTTCACTTGGAAGAGAGAATTTACAGTTGAAGTATAGTGATGGGGACAAAGCCTTTGGTACATCAAGCGAACTCTGTGTTGATGAAAGATTGAGAATTGCATTAGATGGGATTATAGTGGTCAGCATGGAAATATTTCGCCCTCAAATTTTAGATAGTCTTGTTCCAAAAACCTTAAAAGGTAAGATAAGAATTACCACAAGATGCTTATGGCTAGACAAAGGGAAGCTGTTGGATGCGCTTCATAAAGCTGCTCGTGTTGCACTTTCAAGCTTCCCTGTGAACTCTCCACTTGCCCACATTGAACGAACTGTGTCTGAGGTATTGAGGAAGATGGTGAGGAAGTACAGTGGAAAACAGCCTGAAGTTATTGTCAGTGCTATAGAAAATCCTGCACCTGGTTTCACTAATGGGTTGAGCTCAAGGCTGTCAGGAAAATCCCATGCGAGTCTTGGAATATCATCATTGAGAAAAGCTGTGAATGGACGTGTGAAGGAAAATCAGTCTACTAAAATGCAAATAAGAGATGATGAAATTGTTGTTGAAGAATTACTACCCGAGGAAGACCTTTCTAATTCAAGTGGAGCTGACGGAGATAGCTCTAATTCAGATGATCAGGATGGATTTTGGAAATCATTAATTACATCTTCACCGGTTGAGAAGCCTATCGAAGCTAACCACAATTATGTTTCAGAAAAGGAGCCAAAGTCCCAGCTGAAGAAAGATGATGGTTCTGAAGACATTGATGAAGTCAAGTCTGAAAAGATGTCAAATTCAGAAGCCAAAGCTTCAAAGCCGGTGAAGAGAAACAAATGGAAACCTGAGGAAGTTAAGAAGCTGATTGTCTTGCGTGGGAGGTTGCATGACAGATTTCAGGTTGTGAAGGGAAGAATGGCCCTCTGGGAAGAGATATCTCAGAATTTGTTGGCTGAAGGAGTCAACAGAAGTCCAGGGCAGTGTAAGTCTCATTGGAGATCTTTGGTGCAAAAATACGAGGAGATCAAGACTGGAAAGAGAAGCGGGATAAGTTGGCCACATCTTGAGGATATGGACAGGATTCTGTCTGATAATGAGGCCCTTACAACAAAATGA 2712 0.4266 MATCASLSLCSYSLYRQRSYPRMPSIFCSVGSSVAVGTDGSKVPGKRSRRTEGPRRSMEDSVQRKMEQFYEGSDGPPLRVLPIGGLGEIGMNCMLVGNYDRYILIDAGVMFPDYDELGVQKIIPDTTFIRKWSHKIEAVVITHGHEDHIGALPWVIPALDSHTPIFASSFTMELIKKRLKEYGIFLPSRLKTFSTRKRFMAGPFEIEPIRVTHSIPDCCGLVLRCSDGTILHTGDWKIDETPLDGKVFDREALEDLSKEGVTLMMSDSTNVLSPGRTTSESVVADALLRHISASKGRVITTQFASNIHRLGSVKAAADLTGRKLVFVGMSLRTYLDAAWKDGQAPIDPSTLVKVEDIDAYAPKDLLIVTTGSQAEPRAALNLASYGSSHFFKLTKEDVILYSAKVIPGNESRVMKMLNRISEIGSTIVMGKNERLHTSGHGYRGELEEWEGGRGLGKSSGRVASLSNASCGSLILGSSGEEVLRIVKPQHFLPIHGELLFLKEHELLGKSSGIRHTAVIKNGEMLGVSHLRNRRVLSNGFVSLGRENLQLKYSDGDKAFGTSSELCVDERLRIALDGIIVVSMEIFRPQILDSLVPKTLKGKIRITTRCLWLDKGKLLDALHKAARVALSSFPVNSPLAHIERTVSEVLRKMVRKYSGKQPEVIVSAIENPAPGFTNGLSSRLSGKSHASLGISSLRKAVNGRVKENQSTKMQIRDDEIVVEELLPEEDLSNSSGADGDSSNSDDQDGFWKSLITSSPVEKPIEANHNYVSEKEPKSQLKKDDGSEDIDEVKSEKMSNSEAKASKPVKRNKWKPEEVKKLIVLRGRLHDRFQVVKGRMALWEEISQNLLAEGVNRSPGQCKSHWRSLVQKYEEIKTGKRSGISWPHLEDMDRILSDNEALTTK 903
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto4g0107 903 MobiDBLite consensus disorder prediction 726 810 - -
Sto4g0107 903 Pfam Myb/SANT-like DNA-binding domain 809 893 IPR044822 -
Sto4g0107 903 MobiDBLite consensus disorder prediction 43 61 - -
Sto4g0107 903 Pfam Beta-lactamase superfamily domain 101 237 IPR001279 -
Sto4g0107 903 MobiDBLite consensus disorder prediction 766 810 - -
Sto4g0107 903 CDD RNaseJ_MBL-fold 81 268 - -
Sto4g0107 903 SUPERFAMILY Metallo-hydrolase/oxidoreductase 78 524 IPR036866 -
Sto4g0107 903 SMART Lactamase_B_5a 90 287 IPR001279 -
Sto4g0107 903 ProSiteProfiles Myb-like domain profile. 804 868 IPR001005 -
Sto4g0107 903 MobiDBLite consensus disorder prediction 38 61 - -
Sto4g0107 903 PANTHER RNA-METABOLISING METALLO-BETA-LACTAMASE 1 448 - -
Sto4g0107 903 PANTHER RNA-METABOLISING METALLO-BETA-LACTAMASE 480 903 - -
Sto4g0107 903 Gene3D - 82 448 IPR036866 -
Sto4g0107 903 Gene3D - 475 542 IPR036866 -
Sto4g0107 903 CDD GT1 810 875 - -
Sto4g0107 903 SMART sant 808 870 IPR001005 -
Sto4g0107 903 SUPERFAMILY Homeodomain-like 807 869 IPR009057 -
Sto4g0107 903 MobiDBLite consensus disorder prediction 733 753 - -
Sto4g0107 903 Gene3D - 812 873 - -
Sto4g0107 903 PANTHER RIBONUCLEASE J 480 903 - -
Sto4g0107 903 PANTHER RIBONUCLEASE J 1 448 - -
Sto4g0107 903 Gene3D - 279 429 IPR042173 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto4g0107 Sto-Chr4 869402 877987 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto4g0107 811 895 Trihelix Transcription Factor Family AT2G38250 34.483 2.66e-08 54.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Sto4g0107 Lactamase_B_2 1.4e-10 CL0381
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto4g0107 - - gmx:100783850 1324.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto4g0107 4 869402 877987 Sto4g0107 4 869402 877987 ECH