LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sto4g0088	ATGATTCCTCTTTATAGTGCCTTCAAGTGTGAGATAATTAATgatattgatgatgatgaagaagaaaccAAGAgacacataaaaaatattaagacaTCCTCTCATcgtcttcatcatcttcatttcAGAGATCACACATGGACTCTCACACAGAGATACCTTGCAGCTGAAGCTACTGAAGAAGACATGATTATTATCAGTAATACTAATAACGataatgaagaagaaaagcatGAAATGAGGCTTGTTCAACTCCTAATTGCTTGTGCTGAAGCTGTGGCTTCTCGTGACAAATCACATGCTTCCACTTTACTCTCTCATCTTAGATCCATTTCTTTAGTCTTTGGATCTTCCTTTCAAAGGGTTTCTTCTTGTTTTGTCCAAGCCCTTTCTCATCGTCTTGATTCTCTCTTTCAACCTATTTCCTCTGTTATGATCATGAACATCATGGATATTAATGCTGCATCATCCTTATATCATCATCAAAAAATGGAAGAAGcttataatttactctatcaaATCTCCCCACATATTCAATTTGGTCATTATGTAGGTAATTCCACAATATTGGAAGCCTTTGAGGGTCACACTTTTCTTCATGTTCTAGACTTAGGGATGAGCCTCGGCCTTTACCACGGACACCAATGGCGAGGACTAATCCAAACCCTTGTGAACCGGACCGGAGGCCACCTAGTCCTCCGCCGGCTAAAAATCACTGGCGTAGGCCTTGACATTGTCAAACTTCAGACAATAGGTGAAGAGCTAGAAGCCTACGCAGATACCTTAGGAATCAATCTGGAATTCTCGGCGGTACGAAAGAACTTAGAAGATCTAAGTCCTAATGACATAAAAGTCCATGAAGGAGAAGTTCTTGTTGTGAATAGCATTCTTCAGTTACATTGTGTGATTAAAGAAAGCCATGGTGCTTTAAACTCAGTCCTCCAAATGATCCATAACCTCTCACCAAAAGTGTTGGTCATGGTGGAGCAGGACTCGAGCCATAATGGACCATTCTTTCTTGGGAGGTTCATGGAGGCATTGCATTATTACTCTGCTATATTTGACTCACTTGATGCTATGTTGCCTAAGTATGACACAAAGAGAGCCAAGATAGAACAGTTTTACTTTGGAGAAGAGATAAAGAACATAATGGTGGCTCGAGCCAAGGAGTGGCTTATGGAGAAAAGGGTTTGTGATGGGTTTACTTTGGTGGAAGAGAAAGGGTGTGATGCTTTCAAGGACATAAGGATATATGATATGAGAAAAGACATTGAAGAACGAGTTGAAGAAACTTACATAATGGTCAAGCCTGATGGTGTTCAACGTGGCCTCGTTGGAGAAATTATTTCGAGGTTTGAGAAGAAAGGGTTTAAGTTAAAAGGCTTGAAGCTCTTCCAATGCTCAAAAGAATTAGCAGAGGAGCACTACAAGGACCTAAAAGCCAAGTCATTTTTCCCTAAGCTGATAGACTATATTACCTCAGGTCCCGTCGTGTCTATGGCTTGGGAGGGTGTTGGAGTTGTGGCCTCGGCACGTAAGCTTATAGGGTCTACAGATCCTCTACAAGCTGAACCAGGAACAATAAGAGGGGATCTTGCTGTTCAAACAGGAAGGAATATTGTACATGGCAGTGACAGCCCTGAGAATGGCCAGCGCGAAATAGCACTATGGTTTAAAGAAGGCGAGTTATGCGAATGGACTCCAGTCCTAGCACCATGGCTAAGAGAGTGA	1731	0.3957	MIPLYSAFKCEIINDIDDDEEETKRHIKNIKTSSHRLHHLHFRDHTWTLTQRYLAAEATEEDMIIISNTNNDNEEEKHEMRLVQLLIACAEAVASRDKSHASTLLSHLRSISLVFGSSFQRVSSCFVQALSHRLDSLFQPISSVMIMNIMDINAASSLYHHQKMEEAYNLLYQISPHIQFGHYVGNSTILEAFEGHTFLHVLDLGMSLGLYHGHQWRGLIQTLVNRTGGHLVLRRLKITGVGLDIVKLQTIGEELEAYADTLGINLEFSAVRKNLEDLSPNDIKVHEGEVLVVNSILQLHCVIKESHGALNSVLQMIHNLSPKVLVMVEQDSSHNGPFFLGRFMEALHYYSAIFDSLDAMLPKYDTKRAKIEQFYFGEEIKNIMVARAKEWLMEKRVCDGFTLVEEKGCDAFKDIRIYDMRKDIEERVEETYIMVKPDGVQRGLVGEIISRFEKKGFKLKGLKLFQCSKELAEEHYKDLKAKSFFPKLIDYITSGPVVSMAWEGVGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNIVHGSDSPENGQREIALWFKEGELCEWTPVLAPWLRE	576

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Sto4g0088	576	PANTHER	DELLA PROTEIN RGL1-LIKE	18	384	-	-
Sto4g0088	576	Pfam	GRAS domain family	82	390	IPR005202	-
Sto4g0088	576	SMART	ndk_5	428	565	IPR034907	-
Sto4g0088	576	PANTHER	OSJNBA0084A10.13 PROTEIN-RELATED	18	384	IPR005202	-
Sto4g0088	576	CDD	NDPk_I	429	558	-	-
Sto4g0088	576	ProSitePatterns	Nucleoside diphosphate kinases active site.	539	547	IPR023005	-
Sto4g0088	576	Hamap	Nucleoside diphosphate kinase [ndk].	428	563	IPR001564	GO:0004550\|GO:0006165\|GO:0006183\|GO:0006228\|GO:0006241
Sto4g0088	576	Gene3D	-	424	576	IPR036850	-
Sto4g0088	576	ProSiteProfiles	GRAS family profile.	73	469	IPR005202	-
Sto4g0088	576	Pfam	Nucleoside diphosphate kinase	429	562	IPR034907	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Sto4g0088	Sto-Chr4	711442	719013	Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Sto4g0088	80	390	GRAS Transcription Factor Family	AT1G66350	31.949	6.05e-46	167

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	GRAS	Sto4g0088		GRAS	1.4e-80	CL0063

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Sto4g0088	-		-	mdm:114820853	486.108

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