Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto4g0088 ATGATTCCTCTTTATAGTGCCTTCAAGTGTGAGATAATTAATgatattgatgatgatgaagaagaaaccAAGAgacacataaaaaatattaagacaTCCTCTCATcgtcttcatcatcttcatttcAGAGATCACACATGGACTCTCACACAGAGATACCTTGCAGCTGAAGCTACTGAAGAAGACATGATTATTATCAGTAATACTAATAACGataatgaagaagaaaagcatGAAATGAGGCTTGTTCAACTCCTAATTGCTTGTGCTGAAGCTGTGGCTTCTCGTGACAAATCACATGCTTCCACTTTACTCTCTCATCTTAGATCCATTTCTTTAGTCTTTGGATCTTCCTTTCAAAGGGTTTCTTCTTGTTTTGTCCAAGCCCTTTCTCATCGTCTTGATTCTCTCTTTCAACCTATTTCCTCTGTTATGATCATGAACATCATGGATATTAATGCTGCATCATCCTTATATCATCATCAAAAAATGGAAGAAGcttataatttactctatcaaATCTCCCCACATATTCAATTTGGTCATTATGTAGGTAATTCCACAATATTGGAAGCCTTTGAGGGTCACACTTTTCTTCATGTTCTAGACTTAGGGATGAGCCTCGGCCTTTACCACGGACACCAATGGCGAGGACTAATCCAAACCCTTGTGAACCGGACCGGAGGCCACCTAGTCCTCCGCCGGCTAAAAATCACTGGCGTAGGCCTTGACATTGTCAAACTTCAGACAATAGGTGAAGAGCTAGAAGCCTACGCAGATACCTTAGGAATCAATCTGGAATTCTCGGCGGTACGAAAGAACTTAGAAGATCTAAGTCCTAATGACATAAAAGTCCATGAAGGAGAAGTTCTTGTTGTGAATAGCATTCTTCAGTTACATTGTGTGATTAAAGAAAGCCATGGTGCTTTAAACTCAGTCCTCCAAATGATCCATAACCTCTCACCAAAAGTGTTGGTCATGGTGGAGCAGGACTCGAGCCATAATGGACCATTCTTTCTTGGGAGGTTCATGGAGGCATTGCATTATTACTCTGCTATATTTGACTCACTTGATGCTATGTTGCCTAAGTATGACACAAAGAGAGCCAAGATAGAACAGTTTTACTTTGGAGAAGAGATAAAGAACATAATGGTGGCTCGAGCCAAGGAGTGGCTTATGGAGAAAAGGGTTTGTGATGGGTTTACTTTGGTGGAAGAGAAAGGGTGTGATGCTTTCAAGGACATAAGGATATATGATATGAGAAAAGACATTGAAGAACGAGTTGAAGAAACTTACATAATGGTCAAGCCTGATGGTGTTCAACGTGGCCTCGTTGGAGAAATTATTTCGAGGTTTGAGAAGAAAGGGTTTAAGTTAAAAGGCTTGAAGCTCTTCCAATGCTCAAAAGAATTAGCAGAGGAGCACTACAAGGACCTAAAAGCCAAGTCATTTTTCCCTAAGCTGATAGACTATATTACCTCAGGTCCCGTCGTGTCTATGGCTTGGGAGGGTGTTGGAGTTGTGGCCTCGGCACGTAAGCTTATAGGGTCTACAGATCCTCTACAAGCTGAACCAGGAACAATAAGAGGGGATCTTGCTGTTCAAACAGGAAGGAATATTGTACATGGCAGTGACAGCCCTGAGAATGGCCAGCGCGAAATAGCACTATGGTTTAAAGAAGGCGAGTTATGCGAATGGACTCCAGTCCTAGCACCATGGCTAAGAGAGTGA 1731 0.3957 MIPLYSAFKCEIINDIDDDEEETKRHIKNIKTSSHRLHHLHFRDHTWTLTQRYLAAEATEEDMIIISNTNNDNEEEKHEMRLVQLLIACAEAVASRDKSHASTLLSHLRSISLVFGSSFQRVSSCFVQALSHRLDSLFQPISSVMIMNIMDINAASSLYHHQKMEEAYNLLYQISPHIQFGHYVGNSTILEAFEGHTFLHVLDLGMSLGLYHGHQWRGLIQTLVNRTGGHLVLRRLKITGVGLDIVKLQTIGEELEAYADTLGINLEFSAVRKNLEDLSPNDIKVHEGEVLVVNSILQLHCVIKESHGALNSVLQMIHNLSPKVLVMVEQDSSHNGPFFLGRFMEALHYYSAIFDSLDAMLPKYDTKRAKIEQFYFGEEIKNIMVARAKEWLMEKRVCDGFTLVEEKGCDAFKDIRIYDMRKDIEERVEETYIMVKPDGVQRGLVGEIISRFEKKGFKLKGLKLFQCSKELAEEHYKDLKAKSFFPKLIDYITSGPVVSMAWEGVGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNIVHGSDSPENGQREIALWFKEGELCEWTPVLAPWLRE 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto4g0088 576 PANTHER DELLA PROTEIN RGL1-LIKE 18 384 - -
Sto4g0088 576 Pfam GRAS domain family 82 390 IPR005202 -
Sto4g0088 576 SMART ndk_5 428 565 IPR034907 -
Sto4g0088 576 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 18 384 IPR005202 -
Sto4g0088 576 CDD NDPk_I 429 558 - -
Sto4g0088 576 ProSitePatterns Nucleoside diphosphate kinases active site. 539 547 IPR023005 -
Sto4g0088 576 Hamap Nucleoside diphosphate kinase [ndk]. 428 563 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
Sto4g0088 576 Gene3D - 424 576 IPR036850 -
Sto4g0088 576 ProSiteProfiles GRAS family profile. 73 469 IPR005202 -
Sto4g0088 576 Pfam Nucleoside diphosphate kinase 429 562 IPR034907 -
Sto4g0088 576 SUPERFAMILY Nucleoside diphosphate kinase, NDK 428 574 IPR036850 -
Sto4g0088 576 PRINTS Nucleoside diphosphate kinase signature 431 453 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
Sto4g0088 576 PRINTS Nucleoside diphosphate kinase signature 475 494 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
Sto4g0088 576 PRINTS Nucleoside diphosphate kinase signature 495 512 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
Sto4g0088 576 PRINTS Nucleoside diphosphate kinase signature 516 532 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
Sto4g0088 576 PRINTS Nucleoside diphosphate kinase signature 539 558 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto4g0088 Sto-Chr4 711442 719013 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto4g0088 80 390 GRAS Transcription Factor Family AT1G66350 31.949 6.05e-46 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Sto4g0088 GRAS 1.4e-80 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto4g0088 - - mdm:114820853 486.108