Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto4g0066 ATGGAGGAGGCTTTTGATTGGACTTCAGGTGTTTGTGCAAATGCCTCAGAGAAAAGTCCTAGTGGTTTTCTGGTTGATTCTGATGCAATAACAAGTGGGTTTGTTTCATCTTCGTCTCTTGTTTTGGATAGCGAGAAGGGAGAGCTTGTGGCTGCCCCTGTCAAATTGGATCGCAAGGGTGTGTCCACTGAGAGAAGTCTTGAAGCTTTGAGGAACCATAGTGAGGCAGAAAGGAGGAGGAGAGCAAGGATCAATGCACATCTTGATACTCTTAGGAGTGTAATTCCTGGTGCTAAGAAGATGGACAAGGCGTCTTTACTTGCTGAGGTTATCGGACATTTGAAAGATTTGAAACGGAATGCAAGTCAAGCATGTGAAGGATTGATGATACCAAAAGACAACGATGAAATAAAAGTTGAAGAACAGGAGGGTGGTTCATATGGTTTCCCTTATTCAATTAGGGCCTCTCTATGTTGTGAATATAAACCTGGGTTGTTGTCTGATATAAGACAAGCACTTGATGCCCTTCATCTTATGATAATGAGGGCAGAAATTTCCACCTTGGGAGGAAGGATGAAGAATGTCTTTGTCATAATTAGCTGCAAAGAACAGAACATCGAGGATGCTGAATACCGTCACTTTCTTGCTGGCTCTGTTCACCAAGCTATTAGGTCTGTACTTGATAGATTTTCTTCTTCACAAGACCTCTTAGGAACAAGAAAGAGACGGAGGATTTCTATATTCAGTTCATCAGCTTTAGAAGATATCTTGTGA 774 0.4186 MEEAFDWTSGVCANASEKSPSGFLVDSDAITSGFVSSSSLVLDSEKGELVAAPVKLDRKGVSTERSLEALRNHSEAERRRRARINAHLDTLRSVIPGAKKMDKASLLAEVIGHLKDLKRNASQACEGLMIPKDNDEIKVEEQEGGSYGFPYSIRASLCCEYKPGLLSDIRQALDALHLMIMRAEISTLGGRMKNVFVIISCKEQNIEDAEYRHFLAGSVHQAIRSVLDRFSSSQDLLGTRKRRRISIFSSSALEDIL 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto4g0066 257 Gene3D - 64 125 IPR036638 GO:0046983
Sto4g0066 257 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 5 256 - -
Sto4g0066 257 Pfam Helix-loop-helix DNA-binding domain 72 117 IPR011598 GO:0046983
Sto4g0066 257 PANTHER TRANSCRIPTION FACTOR BHLH30 5 256 IPR045847 GO:0003700|GO:0006355
Sto4g0066 257 SMART finulus 74 123 IPR011598 GO:0046983
Sto4g0066 257 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 68 117 IPR011598 GO:0046983
Sto4g0066 257 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 71 122 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto4g0066 Sto-Chr4 565226 566692 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto4g0066 37 246 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 41.475 6.51e-34 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Sto4g0066 HLH 4.1e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto4g0066 - - lja:Lj3g3v2848980.1 373.244